# List of top-scoring protein chains for T0487.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e09A	248	23.58		
2dzwA	248	33.05		
2dzpA	248	33.13		
1geqA	248	33.16	c.1.2.4	28589
2dzuA	248	36.91		
3bkzA	201	37.36		
1q20A	299	41.46	c.37.1.5	95616
1q1qA	350	42.01	c.37.1.5	95599
2zjrD	180	44.74		
1pnuD	178	45.02	i.1.1.1	88201
2dztA	248	51.09		
2dzsA	248	52.40		
2fdiA	211	53.65	b.82.2.10	133311
2dzvA	248	57.70		
1ofuA	320	57.85	c.32.1.1,d.79.2.1	86972,86973
1wr2A	238	60.88		
2i6jA	161	60.97		
2i6oA	161	62.02		
3bi3A	201	65.84		
3bieA	202	66.29		
1rihH	231	70.59	b.1.1.1,b.1.1.2	97509,97510
2vawA	394	70.75		
1ig3A	263	73.39	b.82.6.1,c.100.1.1	62358,62359
2zitB	207	85.87		
1dmaA	214	85.95	d.166.1.1	42251
1aerA	211	86.20	d.166.1.1	42249
1zm9B	207	87.54	d.166.1.1	125341
1xk9A	215	88.34	d.166.1.1	122074