# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ur4A	399	1.016	c.1.8.3	113402
3bblA	287	1.039		
1q0rA	298	2.753	c.69.1.28	95508
1wkyA	464	4.405	b.18.1.31,c.1.8.3	120992,120993
1w9hA	427	8.166	c.55.3.10	120785
2g2cA	167	9.282	c.57.1.1	134535
1vc4A	254	9.808	c.1.2.4	100557
2ek8A	421	11.28		
2obbA	142	11.99		
2ywiA	196	12.19		
2c1lA	358	14.91		
3bzwA	274	18.24		
1a53	247	19.82		
1nrwA	288	21.20	c.108.1.10	86128
1yx1A	264	21.82	c.1.15.7	124169
2z00A	426	22.05		
1ujpA	271	22.18	c.1.2.4	99462
2bw0A	329	25.46	b.46.1.1,c.65.1.1	129303,129304
2ywrA	216	26.54		
2gj8A	172	32.98	c.37.1.8	135270
1y3tA	337	34.70	b.82.1.5	122600
2fliA	220	35.68	c.1.2.2	133714
1x1zA	252	38.51	c.1.2.3	121613
1bx4A	345	38.52	c.72.1.1	34935
2akoA	251	41.06	c.73.1.3	126923
2aouA	292	41.16	c.66.1.19	127100
1hjsA	332	41.28	c.1.8.3	83492
2hx0A	154	41.87	d.290.1.3	136830
1k77A	260	41.91	c.1.15.5	72096
1f20A	435	41.98	b.43.4.1,c.25.1.4	64932,64933
1u04A	771	42.19	b.34.14.1,c.55.3.10	107539,107540
2rgyA	290	42.54		
1oj5A	132	44.02	d.110.3.8	93087
1xzwA	426	44.23	b.1.12.1,d.159.1.1	116270,116271
2f5tX	233	45.86		
1gq6A	313	47.17	c.42.1.1	70341
2dykA	161	47.92		
2hs3A	603	47.95	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
1vkyA	347	48.76	e.53.1.1	108696
2qulA	290	50.45		
1lt8A	406	52.28	c.1.26.1	78186
1puiA	210	52.93	c.37.1.8	88292
1tjyA	316	54.24	c.93.1.1	107062
2pbqA	178	54.41		
1fjgK	129	54.52	c.55.4.1	33733
1krhA	338	56.13	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1piiA	452	56.62	c.1.2.4,c.1.2.4	28559,28563
1y81A	138	57.79	c.2.1.8	122731
1bqcA	302	63.86	c.1.8.3	28831
1y5eA	169	65.33	c.57.1.1	122632
1j6oA	268	68.19	c.1.9.12	77088
1ur3M	319	68.81	c.1.7.1	99806
1uuyA	167	69.66	c.57.1.1	108059
3cnyA	301	72.89		
1geqA	248	73.68	c.1.2.4	28589
2dztA	248	74.65		
3c5vA	316	75.50		
2zadA	345	76.24		
1q7zA	566	77.01	c.1.21.2,c.1.26.1	96090,96091
1gca	309	77.75		
1m65A	245	80.01	c.6.3.1	84847
2pjkA	178	80.55		
1th8B	116	81.28	c.13.2.1	106909
2omkA	231	87.17		
4pgaA	337	89.57	c.88.1.1	35565