# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ur4A	399	1.857	c.1.8.3	113402
3bblA	287	1.978		
1q0rA	298	5.701	c.69.1.28	95508
2g2cA	167	10.79	c.57.1.1	134535
2ywiA	196	11.15		
1vc4A	254	13.38	c.1.2.4	100557
1w9hA	427	16.38	c.55.3.10	120785
1wkyA	464	17.66	b.18.1.31,c.1.8.3	120992,120993
2obbA	142	17.71		
1ujpA	271	18.21	c.1.2.4	99462
1a53	247	19.06		
2aouA	292	19.09	c.66.1.19	127100
2ywrA	216	19.53		
3bzwA	274	23.55		
1nrwA	288	28.38	c.108.1.10	86128
2z00A	426	29.12		
1bx4A	345	33.00	c.72.1.1	34935
2c1lA	358	33.03		
1yx1A	264	33.04	c.1.15.7	124169
2bw0A	329	33.99	b.46.1.1,c.65.1.1	129303,129304
1ur3M	319	36.18	c.1.7.1	99806
2fliA	220	36.91	c.1.2.2	133714
1tjyA	316	37.52	c.93.1.1	107062
1piiA	452	37.59	c.1.2.4,c.1.2.4	28559,28563
1oj5A	132	38.64	d.110.3.8	93087
2rjoA	332	40.45		
1u04A	771	44.60	b.34.14.1,c.55.3.10	107539,107540
1f20A	435	45.08	b.43.4.1,c.25.1.4	64932,64933
2akoA	251	47.37	c.73.1.3	126923
1vkyA	347	48.23	e.53.1.1	108696
2zadA	345	48.71		
1y81A	138	49.07	c.2.1.8	122731
2hx0A	154	50.80	d.290.1.3	136830
2i33A	258	54.67		
2f5tX	233	55.35		
2h3hA	313	57.06		
1jkxA	212	57.68	c.65.1.1	66813
1k77A	260	57.86	c.1.15.5	72096
2dztA	248	59.16		
1gca	309	59.51		
1geqA	248	61.24	c.1.2.4	28589
2gj8A	172	61.28	c.37.1.8	135270
1y3tA	337	62.73	b.82.1.5	122600
2ek8A	421	65.52		
1krhA	338	65.71	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1x1zA	252	67.66	c.1.2.3	121613
1gxuA	91	69.58	d.58.10.1	76378
2rgyA	290	69.64		
2fvyA	309	69.87	c.93.1.1	134227
1y5eA	169	72.54	c.57.1.1	122632
2r91A	286	73.37		
1puiA	210	74.49	c.37.1.8	88292
2pjkA	178	79.42		
1hjsA	332	80.83	c.1.8.3	83492
1q7zA	566	82.75	c.1.21.2,c.1.26.1	96090,96091
3b5vA	248	83.31		
1wdiA	345	83.38	e.53.1.1	114535
2nyiA	195	84.75		
2pbqA	178	87.53		
1lt8A	406	88.08	c.1.26.1	78186
1meoA	209	89.67	c.65.1.1	79035