# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bblA 287 0.2205 1q0rA 298 0.9484 c.69.1.28 95508 2i57A 438 2.219 1ur3M 319 2.922 c.1.7.1 99806 2pnqA 467 3.466 1nrwA 288 4.469 c.108.1.10 86128 1w9hA 427 4.670 c.55.3.10 120785 1k77A 260 4.774 c.1.15.5 72096 2qn6A 414 5.555 2j6iA 364 6.289 1piiA 452 7.089 c.1.2.4,c.1.2.4 28559,28563 1fobA 334 8.037 c.1.8.3 83255 2pgnA 589 9.329 1f20A 435 10.30 b.43.4.1,c.25.1.4 64932,64933 2ywiA 196 10.56 1hjsA 332 11.32 c.1.8.3 83492 1wu2A 396 12.02 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 3bzwA 274 12.28 1vc4A 254 13.16 c.1.2.4 100557 1muwA 386 14.30 c.1.15.3 79495 2e87A 357 14.52 1u04A 771 14.70 b.34.14.1,c.55.3.10 107539,107540 1mkyA 439 15.02 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1cqxA 403 15.71 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2bdrA 175 15.85 b.82.1.14 128342 1qhxA 178 16.49 c.37.1.3 31936 2qt3A 403 17.68 1ujpA 271 17.92 c.1.2.4 99462 1lt8A 406 18.15 c.1.26.1 78186 2fbqA 235 18.42 a.4.1.9,a.121.1.1 133256,133257 2obbA 142 18.51 1h54A 754 18.54 a.102.1.4,b.30.5.3 60634,60635 1sc6A 404 19.06 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1ynpA 317 20.94 2cvbA 188 21.23 c.47.1.10 130859 1jkxA 212 21.34 c.65.1.1 66813 1u2zA 433 22.01 c.66.1.31 107626 2og9A 393 22.59 2h9aA 445 22.69 3bmvA 683 23.17 2djiA 590 23.83 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 2basA 431 26.28 c.1.33.1,d.110.6.2 128244,128245 2h3hA 313 26.31 1puiA 210 27.40 c.37.1.8 88292 2pbqA 178 27.76 2ek8A 421 27.91 1q7zA 566 27.98 c.1.21.2,c.1.26.1 96090,96091 2ywrA 216 28.61 3bkwA 243 30.77 2yxzA 311 31.21 2akoA 251 31.92 c.73.1.3 126923 2z00A 426 32.44 2gl5A 410 33.23 c.1.11.2,d.54.1.1 135336,135337 1vbjA 281 33.64 2fliA 220 34.91 c.1.2.2 133714 1q74A 303 35.23 c.134.1.1 96019 2fn9A 290 35.88 2akaB 299 36.16 c.37.1.8 126914 2rjoA 332 36.19 1tv8A 340 36.53 c.1.28.3 107352 1m65A 245 37.49 c.6.3.1 84847 2gj8A 172 37.76 c.37.1.8 135270 1smdA 496 38.47 b.71.1.1,c.1.8.1 27768,28755 2qu8A 228 38.53 1vjjA 692 39.51 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1wf3A 301 39.71 c.37.1.8,d.52.3.1 114574,114575 1y81A 138 40.72 c.2.1.8 122731 2ze0A 555 40.86 1vl2A 421 42.42 c.26.2.1,d.210.1.1 108708,108709 2j13A 247 42.44 c.6.2.3 137934 1tvnA 293 42.81 c.1.8.3 119360 2i4rA 102 43.28 2jdxA 385 44.14 d.126.1.2 41139 3b4uA 294 44.33 4pgaA 337 44.90 c.88.1.1 35565 3ctpA 330 44.91 8abp 306 45.47 1k0fA 277 48.25 c.92.2.2 71974 2qqjA 325 48.86 2zadA 345 51.82 1iuqA 367 52.12 c.112.1.1 90703 1udcA 338 52.14 c.2.1.2 29785 2aeeA 211 52.15 c.61.1.1 126620 1v71A 323 52.39 c.79.1.1 119859 2i1yA 301 52.39 2c2jA 211 52.87 1sflA 238 54.23 c.1.10.1 112077 3d02A 303 54.37 1jnyA 435 54.55 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1cg2A 393 55.28 c.56.5.4,d.58.19.1 33844,39360 1wc2A 181 56.62 1x1zA 252 59.25 c.1.2.3 121613 2zfdA 226 59.84 2hs3A 603 60.18 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2r6r1 338 60.58 1n7hA 381 60.65 c.2.1.2 80250 3d0cA 314 60.97 2ae5B 528 61.05 1vcoA 550 61.28 c.23.16.1,c.37.1.10 108508,108509 1y0yA 353 61.86 b.49.3.1,c.56.5.4 122514,122515 1kl1A 419 62.26 c.67.1.4 72663 1z7aA 308 62.31 c.6.2.6 124591 2htdA 140 64.44 2r91A 286 65.14 2rgyA 290 65.87 1gvhA 396 65.90 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2c0hA 353 66.49 c.1.8.3 129594 1ppjB 439 67.31 d.185.1.1,d.185.1.1 104254,104255 1oj5A 132 68.08 d.110.3.8 93087 2o56A 407 68.40 1hp1A 516 68.70 d.114.1.1,d.159.1.2 70976,70977 2o7cA 398 69.64 2b78A 385 70.40 b.122.1.9,c.66.1.51 128025,128026 2vdwB 287 70.70 1geqA 248 70.82 c.1.2.4 28589 1vpvA 300 71.50 c.119.1.1 113975 2dztA 248 71.52 1bqcA 302 72.07 c.1.8.3 28831 2az4A 429 72.92 d.157.1.10 127597 2gduA 504 73.58 b.71.1.1,c.1.8.1 135032,135033 2hzdA 82 74.58 1gu7A 364 75.10 b.35.1.2,c.2.1.1 83321,83322 1hr6B 443 75.18 d.185.1.1,d.185.1.1 61166,61167 2i2wA 212 76.13 2jg1A 330 76.65 1nd4A 264 77.50 d.144.1.6 91815 1zy9A 564 78.13 b.30.5.11,c.1.8.13 125813,125814 2qcoA 210 79.17 1wd7A 261 80.10 c.113.1.1 114526 2v5xA 388 81.44 2i7aA 174 81.49 1mtzA 293 81.84 c.69.1.7 79467 2z4sA 440 81.96 2fv7A 331 83.25 c.72.1.1 134197 1ipaA 274 83.71 c.116.1.1,d.79.3.3 71254,71255 2dykA 161 84.47 2ovlA 371 84.71 2f2hA 773 84.81 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1n8kA 374 84.99 b.35.1.2,c.2.1.1 80298,80299 1h4pA 408 86.83 c.1.8.3 90617 1eejA 216 86.90 c.47.1.9,d.17.3.1 33057,38071 1tq6A 413 88.03 c.37.1.8 107202 1y5eA 169 88.19 c.57.1.1 122632 2yziA 138 89.07