# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	1.826	c.55.3.10	120785
2nyiA	195	7.612		
2g2cA	167	11.32	c.57.1.1	134535
1fobA	334	12.74	c.1.8.3	83255
2qulA	290	15.35		
2z00A	426	16.17		
1s3iA	310	18.17	b.46.1.1,c.65.1.1	98435,98436
1mkzA	172	25.75	c.57.1.1	84998
2c1lA	358	25.80		
2r6r1	338	26.33		
3cnyA	301	27.18		
1o2dA	371	29.39	e.22.1.2	86591
1oj5A	132	29.62	d.110.3.8	93087
1y63A	184	29.84	c.37.1.1	116494
2gm3A	175	33.38	c.26.2.4	135354
2obbA	142	33.95		
2cftA	298	35.02		
2hk0A	309	35.17		
2q02A	272	36.84		
2vdaA	828	39.82		
1wkyA	464	39.99	b.18.1.31,c.1.8.3	120992,120993
2hx0A	154	41.47	d.290.1.3	136830
2ov6A	101	42.32		
2ywrA	216	42.49		
2uubK	129	43.42	c.55.4.1	139942
1vc4A	254	44.44	c.1.2.4	100557
1th8B	116	44.86	c.13.2.1	106909
2pjkA	178	49.69		
4pgaA	337	49.93	c.88.1.1	35565
1geqA	248	50.09	c.1.2.4	28589
2rjoA	332	50.94		
1vlmA	219	51.12	c.66.1.41	108836
1vkyA	347	52.29	e.53.1.1	108696
1bg4A	302	53.08	c.1.8.3	28806
2ekcA	262	54.30		
2hyxA	352	54.95		
1d2eA	397	55.42	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2tysA	268	56.11	c.1.2.4	28572
1eyeA	280	57.13	c.1.21.1	29672
1di6A	195	58.84	c.57.1.1	33863
2pkfA	334	59.46		
1iuqA	367	60.46	c.112.1.1	90703
1gxuA	91	60.77	d.58.10.1	76378
2qw5A	335	60.83		
1qc5A	192	62.50	c.62.1.1	34147
1tx2A	297	62.70	c.1.21.1	107420
1hjsA	332	63.22	c.1.8.3	83492
1o7jA	327	65.22	c.88.1.1	81140
1f3lA	321	69.26	c.66.1.6	59630
2gzxA	265	69.62		
1pt6A	213	72.29	c.62.1.1	95091
1v7pC	200	72.36	c.62.1.1	108408
2c4nA	250	73.13	c.108.1.14	129837
2vapA	364	73.71		
1nnsA	326	75.78	c.88.1.1	85910
2blnA	305	77.78	b.46.1.1,c.65.1.1	128734,128735
1wdiA	345	78.83	e.53.1.1	114535
2j67A	178	79.65		
2v3gA	283	79.93		
2fepA	289	80.76		
1vl5A	260	81.24	c.66.1.41	108720
1ypxA	375	83.77		
1j79A	347	84.67	c.1.9.4	62675
1dozA	309	87.35	c.92.1.1	35592
3bblA	287	87.99