# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2nyiA	195	4.010		
1w9hA	427	4.582	c.55.3.10	120785
2g2cA	167	7.805	c.57.1.1	134535
2qulA	290	8.383		
1oj5A	132	10.72	d.110.3.8	93087
1s3iA	310	11.96	b.46.1.1,c.65.1.1	98435,98436
1y63A	184	16.87	c.37.1.1	116494
1fobA	334	22.97	c.1.8.3	83255
3cnyA	301	23.27		
2q02A	272	25.54		
1mkzA	172	27.18	c.57.1.1	84998
2c1lA	358	29.27		
2obbA	142	31.25		
2hk0A	309	31.83		
2z00A	426	32.66		
2rjoA	332	34.19		
2vdaA	828	37.56		
1gxuA	91	40.33	d.58.10.1	76378
2cftA	298	40.60		
4pgaA	337	41.90	c.88.1.1	35565
1th8B	116	42.79	c.13.2.1	106909
2r6r1	338	42.95		
2blnA	305	43.13	b.46.1.1,c.65.1.1	128734,128735
2hx1A	284	43.66		
2tysA	268	43.74	c.1.2.4	28572
1geqA	248	46.59	c.1.2.4	28589
2uubK	129	47.64	c.55.4.1	139942
2ywrA	216	48.16		
2hyxA	352	50.74		
1wkyA	464	50.89	b.18.1.31,c.1.8.3	120992,120993
1i60A	278	51.91	c.1.15.4	71118
1hjsA	332	52.40	c.1.8.3	83492
1vkyA	347	53.34	e.53.1.1	108696
1tjyA	316	53.39	c.93.1.1	107062
1mdl	359	53.84		
2zg5A	397	54.26		
2qw5A	335	54.49		
1bg4A	302	54.70	c.1.8.3	28806
1o2dA	371	55.96	e.22.1.2	86591
2ekcA	262	56.93		
1f3lA	321	58.96	c.66.1.6	59630
1gkpA	458	60.03	b.92.1.3,c.1.9.6	70231,70232
2z1yA	397	60.38		
1vlmA	219	61.41	c.66.1.41	108836
1ltqA	301	61.77	c.108.1.9,c.37.1.1	78208,78209
1xp3A	307	64.29	c.1.15.1	122210
2ov6A	101	65.18		
1dozA	309	68.74	c.92.1.1	35592
1o7jA	327	69.08	c.88.1.1	81140
1uuyA	167	74.08	c.57.1.1	108059
2pjkA	178	74.57		
1qc5A	192	76.41	c.62.1.1	34147
1d2eA	397	77.28	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1yx1A	264	77.85	c.1.15.7	124169
1iuqA	367	78.02	c.112.1.1	90703
1vgwA	231	78.38	c.68.1.13	100612
1vc4A	254	78.77	c.1.2.4	100557
1z15A	344	79.72		
1xzoA	174	83.41	c.47.1.10	122474
1di6A	195	83.97	c.57.1.1	33863
1usgA	346	84.28	c.93.1.1	99864
1muwA	386	85.58	c.1.15.3	79495
1rk6A	496	85.66	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601
2dtvA	397	87.65		
2hx0A	154	88.75	d.290.1.3	136830
2fepA	289	88.94		
2gm3A	175	88.98	c.26.2.4	135354
1rlzA	369	89.10	c.31.1.1	104989