# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	4.417	c.55.3.10	120785
1mkzA	172	12.36	c.57.1.1	84998
2nyiA	195	14.97		
2g2cA	167	19.47	c.57.1.1	134535
1kyqA	274	22.76	c.2.1.11,e.37.1.1	73281,73282
2hk0A	309	23.70		
2vdwB	287	24.36		
2ywrA	216	35.01		
1oj5A	132	48.04	d.110.3.8	93087
2ov6A	101	48.45		
2c42A	1231	52.94	c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5	129790,129791,129792,129793,129794
1di6A	195	57.08	c.57.1.1	33863
2pjkA	178	58.24		
1y5eA	169	59.56	c.57.1.1	122632
1th8B	116	64.21	c.13.2.1	106909
2obbA	142	67.34		
2j67A	178	68.14		
1uuyA	167	69.41	c.57.1.1	108059
2qulA	290	74.84		
1y63A	184	79.45	c.37.1.1	116494