# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	6.022	c.55.3.10	120785
2nyiA	195	9.241		
2g2cA	167	10.77	c.57.1.1	134535
1oj5A	132	15.49	d.110.3.8	93087
1fobA	334	17.89	c.1.8.3	83255
1s3iA	310	20.02	b.46.1.1,c.65.1.1	98435,98436
1mkzA	172	23.71	c.57.1.1	84998
2qulA	290	28.33		
2ywrA	216	31.55		
3cnyA	301	32.83		
2q02A	272	37.74		
2rjoA	332	40.39		
2hk0A	309	41.61		
2r6r1	338	41.86		
2z00A	426	42.08		
1hjsA	332	44.82	c.1.8.3	83492
2hyxA	352	46.42		
2c1lA	358	47.27		
1vkyA	347	48.80	e.53.1.1	108696
2obbA	142	51.19		
2pjkA	178	53.33		
2vdaA	828	54.47		
2hx0A	154	55.97	d.290.1.3	136830
1di6A	195	57.63	c.57.1.1	33863
1geqA	248	60.90	c.1.2.4	28589
2blnA	305	63.17	b.46.1.1,c.65.1.1	128734,128735
2ov6A	101	64.77		
1tjyA	316	65.75	c.93.1.1	107062
2cftA	298	71.69		
1rk6A	496	72.89	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601
1wkyA	464	73.23	b.18.1.31,c.1.8.3	120992,120993
2gzxA	265	73.45		
2tysA	268	76.06	c.1.2.4	28572
1vc4A	254	76.18	c.1.2.4	100557
4pgaA	337	78.32	c.88.1.1	35565
1xwyA	264	82.75	c.1.9.12	122411
2pkfA	334	84.24		
1vl5A	260	85.62	c.66.1.41	108720
1ltqA	301	88.71	c.108.1.9,c.37.1.1	78208,78209