# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	5.158	c.55.3.10	120785
2nyiA	195	9.459		
2g2cA	167	11.79	c.57.1.1	134535
1oj5A	132	15.16	d.110.3.8	93087
1fobA	334	19.27	c.1.8.3	83255
1mkzA	172	20.82	c.57.1.1	84998
1s3iA	310	28.11	b.46.1.1,c.65.1.1	98435,98436
2qulA	290	33.05		
3cnyA	301	37.80		
2rjoA	332	39.18		
2z00A	426	42.31		
2hk0A	309	46.43		
1vkyA	347	47.25	e.53.1.1	108696
1di6A	195	51.74	c.57.1.1	33863
2q02A	272	52.10		
2r6r1	338	55.22		
2ywrA	216	55.72		
1hjsA	332	57.34	c.1.8.3	83492
2c1lA	358	58.32		
1tjyA	316	59.39	c.93.1.1	107062
2pjkA	178	59.87		
2obbA	142	61.62		
2cftA	298	61.84		
2vdaA	828	65.56		
2ov6A	101	67.19		
1f3lA	321	71.49	c.66.1.6	59630
1geqA	248	71.77	c.1.2.4	28589
2hx0A	154	71.93	d.290.1.3	136830
2pkfA	334	73.26		
2blnA	305	76.95	b.46.1.1,c.65.1.1	128734,128735
1wkyA	464	77.08	b.18.1.31,c.1.8.3	120992,120993
2hyxA	352	77.37		
1gxuA	91	77.89	d.58.10.1	76378
1rk6A	496	78.94	b.92.1.6,b.92.1.6,c.1.9.11	97599,97600,97601
2gzxA	265	82.28		
1vc4A	254	83.04	c.1.2.4	100557
1o2dA	371	86.45	e.22.1.2	86591