# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oj5A	132	1.329	d.110.3.8	93087
2nyiA	195	3.627		
2vdwB	287	6.427		
1mkzA	172	9.693	c.57.1.1	84998
1y63A	184	12.42	c.37.1.1	116494
1w9hA	427	13.42	c.55.3.10	120785
1s3iA	310	16.21	b.46.1.1,c.65.1.1	98435,98436
1dkzA	219	16.37	a.8.4.1,b.130.1.1	90345,90346
2ov6A	101	17.14		
1kyqA	274	21.35	c.2.1.11,e.37.1.1	73281,73282
2g2cA	167	22.85	c.57.1.1	134535
1wjgA	137	33.28	c.26.2.4	114696
3dfuA	232	33.79		
1u00A	227	36.93	a.8.4.1,b.130.1.1	112900,112901
1th8B	116	37.41	c.13.2.1	106909
1gxuA	91	37.43	d.58.10.1	76378
2c42A	1231	39.16	c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5	129790,129791,129792,129793,129794
2ywrA	216	58.09		
2gm3A	175	59.79	c.26.2.4	135354
2j8aA	136	62.24		
2gclA	261	62.75	b.55.1.10	134991
2rbdA	171	63.83		
1jkxA	212	65.84	c.65.1.1	66813
1f3lA	321	66.60	c.66.1.6	59630
1v7pC	200	68.67	c.62.1.1	108408
1jerA	138	69.62	b.6.1.1	23022
2yziA	138	69.78		
1idrA	136	73.25	a.1.1.1	62301
2iiiA	135	74.34		
1v7bA	185	74.80	a.4.1.9,a.121.1.1	119861,119862
2adgA	214	76.07		
2hk0A	309	77.59		
1t15A	214	82.63	c.15.1.3,c.15.1.3	99067,99068
2pjkA	178	83.04		
2hh7A	119	83.14		
2iw2A	494	87.98		
2piaA	321	88.41	b.43.4.2,c.25.1.2,d.15.4.2	25663,31553,37704
1uby	367	88.60		
1y5eA	169	88.89	c.57.1.1	122632