# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	3.14e-29	c.55.3.10	120785
1u04A	771	2.09e-28	b.34.14.1,c.55.3.10	107539,107540
1jx6A	342	1.888	c.93.1.1	67406
1ma3A	253	6.030	c.31.1.5	78883
1j0dA	341	6.564	c.79.1.1	83902
2yvuA	186	8.959		
1qopB	396	10.81	c.79.1.1	35270
2dxnA	274	11.02		
2e4uA	555	12.03		
1glcG	501	12.19	c.55.1.4,c.55.1.4	33519,33520
1yc5A	246	12.77	c.31.1.5	122910
1shuX	182	15.00	c.62.1.1	98882
2qvcA	313	15.19		
1bu6O	501	15.83	c.55.1.4,c.55.1.4	33499,33500
1gudA	288	17.68	c.93.1.1	83326
2bi7A	384	18.93		
1vb5A	276	23.55	c.124.1.5	113604
1oneA	436	27.07	c.1.11.1,d.54.1.1	29200,38844
1huxA	270	32.65	c.55.1.5	61278
3cz8A	319	33.50		
2z08A	137	38.52		
2rgyA	290	41.79		
3c6qA	311	43.34		
2p3rA	510	44.83	c.55.1.4,c.55.1.4	139471,139472
1j6oA	268	44.95	c.1.9.12	77088
1zu4A	320	45.29		
1z6rA	406	46.74	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
2gy9C	206	47.00		
2driA	271	47.22	c.93.1.1	35637
1zjaA	557	52.17		
2hjhA	354	53.19		
1es9A	232	54.28	c.23.10.3	31340
1vpwA	340	54.61	a.35.1.5,c.93.1.1	17087,35680
1m6iA	493	56.19	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1iciA	256	57.51	c.31.1.5	62266
2al1A	436	59.33	c.1.11.1,d.54.1.1	126949,126950
2oxnA	340	62.16		
1y7pA	223	62.38	c.23.1.7,d.58.18.12	122708,122709
1i7qB	193	63.32	c.23.16.1	61902
1glaG	501	63.36	c.55.1.4,c.55.1.4	33507,33508
1nnt	328	65.20		
2ioyA	283	69.64		
2dri	271	69.94		
2d4wA	504	70.69		
1e5pA	151	70.78	b.60.1.1	59272
1tvzA	388	71.00	c.95.1.2,c.95.1.2	107367,107368
1u2cA	246	74.39	b.1.6.2,d.272.1.1	107610,107611
1uh6A	100	75.64	d.15.1.1	99394
1j0aA	325	79.18	c.79.1.1	83871
2gwmA	200	82.72		
1gv4A	528	82.94	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
2fb2A	340	83.25		
2h3hA	313	83.62		
2b4yA	271	84.17	c.31.1.5	127868
2pceA	386	84.32		
1i1qB	192	85.89	c.23.16.1	61544
1mf7A	194	88.96	c.62.1.1	84937