# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.80e-31 c.55.3.10 120785 1u04A 771 3.67e-31 b.34.14.1,c.55.3.10 107539,107540 1j0dA 341 2.265 c.79.1.1 83902 1jx6A 342 2.815 c.93.1.1 67406 2yvuA 186 2.863 3be4A 217 3.063 2qvcA 313 4.889 2dxnA 274 5.059 2h3hA 313 8.663 1ny1A 240 8.868 c.6.2.3 86395 1qopB 396 8.891 c.79.1.1 35270 3c6qA 311 9.063 2dri 271 9.244 1u3dA 509 9.589 a.99.1.1,c.28.1.1 107638,107639 2gy9C 206 10.64 1shuX 182 16.06 c.62.1.1 98882 2ioyA 283 16.79 1glcG 501 17.34 c.55.1.4,c.55.1.4 33519,33520 1oneA 436 18.21 c.1.11.1,d.54.1.1 29200,38844 2driA 271 19.36 c.93.1.1 35637 1ma3A 253 19.88 c.31.1.5 78883 1vb5A 276 20.35 c.124.1.5 113604 2rgyA 290 20.75 2z08A 137 23.26 2pezA 179 24.83 2al1A 436 25.52 c.1.11.1,d.54.1.1 126949,126950 3cz8A 319 26.09 1wl8A 189 28.80 c.23.16.1 120997 2fn9A 290 28.88 1gv4A 528 30.13 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1yc5A 246 30.21 c.31.1.5 122910 1vl4A 447 30.84 d.283.1.1 108718 2bi7A 384 31.08 1gudA 288 32.05 c.93.1.1 83326 1m6iA 493 32.53 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1w0hA 204 32.94 c.55.3.5 114064 1e1dA 553 33.78 e.26.1.1 43363 1bu6O 501 34.15 c.55.1.4,c.55.1.4 33499,33500 1wmhA 89 34.43 d.15.2.2 114744 1g0uC 243 36.15 d.153.1.4 41948 4enl 436 36.50 1j6oA 268 37.35 c.1.9.12 77088 1e5pA 151 37.98 b.60.1.1 59272 1ew3A 159 38.71 b.60.1.1 27114 1oyjA 231 39.16 a.45.1.1,c.47.1.5 87597,87598 1xngA 268 39.46 c.26.2.1 122186 2eu8A 216 40.01 1wcwA 261 40.21 2fepA 289 40.24 5nul 138 41.42 1akeA 214 42.73 c.37.1.1,g.41.2.1 31905,45185 1es9A 232 43.12 c.23.10.3 31340 1zinA 217 43.18 c.37.1.1,g.41.2.1 31915,45178 1fwyA 331 43.75 b.81.1.4,c.68.1.5 28064,34522 2ax4A 198 44.13 1tedA 393 44.87 c.95.1.2 106807 1nnt 328 46.96 2yvqA 143 47.39 2jg1A 330 47.93 2qalC 232 48.58 2e4uA 555 51.05 2pfkA 320 52.10 c.89.1.1 35577 3brsA 289 52.91 1vkiA 181 53.80 d.116.1.1 108664 2ehbD 143 54.54 2j13A 247 54.63 c.6.2.3 137934 1ak2A 233 55.44 c.37.1.1,g.41.2.1 31894,45195 1gtrA 553 55.66 b.53.1.2,c.26.1.1 26939,31578 1gpmA 525 55.83 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vpwA 340 56.14 a.35.1.5,c.93.1.1 17087,35680 2qh9A 184 57.08 1r59O 505 58.49 c.55.1.4,c.55.1.4 111697,111698 1pfkA 320 58.98 c.89.1.1 35575 2oxnA 340 59.15 1i7qB 193 59.60 c.23.16.1 61902 2vqeC 239 59.60 2o20A 332 62.86 1g0uE 234 62.86 d.153.1.4 41950 1u3eM 174 63.88 d.4.1.3,d.285.1.1 107640,107641 1zxxA 319 64.50 1wtaA 275 65.06 1o20A 427 65.45 c.82.1.1 86556 1dp4A 435 66.32 c.93.1.1 35710 2fvgA 340 66.71 b.49.3.1,c.56.5.4 134201,134202 1wab 232 66.93 1gln 468 68.73 2fb2A 340 68.92 1jv4A 162 71.20 b.60.1.1 67343 1mf7A 194 71.29 c.62.1.1 84937 1sjiA 350 74.88 1o9wA 177 78.15 b.2.3.5 86713 2p5qA 170 78.50 2rjoA 332 78.94 1uh6A 100 82.45 d.15.1.1 99394 2a8yA 270 82.75 1oygA 447 84.15 b.67.2.2 93726 1i1qB 192 84.38 c.23.16.1 61544 1tezA 474 84.39 a.99.1.1,c.28.1.1 112409,112410 1qv9A 283 84.45 c.127.1.1 96356 1zndA 174 85.17 b.60.1.1 125380 1v5sA 126 85.55 d.129.6.1 108384 2pceA 386 86.46 1spxA 278 86.61 c.2.1.2 98958 1acmA 310 86.64 c.78.1.1,c.78.1.1 35180,35181 2q3hA 201 88.31