# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	3.94e-30	b.34.14.1,c.55.3.10	107539,107540
1w9hA	427	3.97e-30	c.55.3.10	120785
1jx6A	342	1.814	c.93.1.1	67406
1qopB	396	3.440	c.79.1.1	35270
1gudA	288	4.356	c.93.1.1	83326
1j0dA	341	5.619	c.79.1.1	83902
2qvcA	313	5.636		
2dxnA	274	8.262		
2yvuA	186	8.382		
2h3hA	313	8.973		
3c6qA	311	9.769		
1ma3A	253	12.34	c.31.1.5	78883
2dri	271	16.33		
2q8zA	342	17.92		
2rjoA	332	18.99		
1vb5A	276	19.11	c.124.1.5	113604
2rgyA	290	21.78		
1vpwA	340	22.18	a.35.1.5,c.93.1.1	17087,35680
2bi7A	384	23.40		
1nnt	328	23.56		
1yc5A	246	24.73	c.31.1.5	122910
1shuX	182	26.20	c.62.1.1	98882
2e4uA	555	27.96		
1ewkA	490	29.17	c.93.1.1	35712
1m6iA	493	30.67	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2driA	271	30.87	c.93.1.1	35637
2fepA	289	31.24		
1oneA	436	31.48	c.1.11.1,d.54.1.1	29200,38844
1zu4A	320	33.30		
1glcG	501	38.19	c.55.1.4,c.55.1.4	33519,33520
2z08A	137	39.39		
2fn9A	290	39.43		
2it1A	362	41.63		
2gwmA	200	43.67		
2ioyA	283	43.88		
3cz8A	319	43.97		
1zjaA	557	45.61		
1ew3A	159	47.15	b.60.1.1	27114
1uh6A	100	48.99	d.15.1.1	99394
3be4A	217	49.35		
1es9A	232	49.57	c.23.10.3	31340
1e5pA	151	51.98	b.60.1.1	59272
1y7pA	223	52.24	c.23.1.7,d.58.18.12	122708,122709
2ehbD	143	54.43		
2oxnA	340	55.01		
1w6tA	444	55.98	c.1.11.1,d.54.1.1	120670,120671
2yvqA	143	57.23		
2qy9A	309	57.64		
1wcwA	261	57.72		
1gv4A	528	57.88	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1iejA	332	63.36	c.94.1.2	62328
1ts9A	102	66.63	b.137.1.1	112618
1jv4A	162	69.30	b.60.1.1	67343
2z1eA	342	70.62		
3b9qA	302	70.84		
1z47A	355	71.05		
2h6fB	437	73.26	a.102.4.3	136186
1ceqA	316	74.80	c.2.1.5,d.162.1.1	30163,42130
3bblA	287	75.69		
1vmaA	306	77.68	a.24.13.1,c.37.1.10	108887,108888
1bu6O	501	78.45	c.55.1.4,c.55.1.4	33499,33500
1fyvA	161	81.16	c.23.2.1	31127
2hzqA	174	84.58		
2fb2A	340	84.67		
2gy9C	206	86.10		
2pceA	386	86.45		
1u7pA	164	86.59	c.108.1.17	113095
2yv5A	302	86.74		
2og2A	359	86.91		
2ax4A	198	87.91		
1rj9A	304	88.76	a.24.13.1,c.37.1.10	97553,97554