# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	7.36e-29	c.55.3.10	120785
1u04A	771	1.06e-28	b.34.14.1,c.55.3.10	107539,107540
1jx6A	342	2.587	c.93.1.1	67406
1j0dA	341	3.247	c.79.1.1	83902
1qopB	396	5.057	c.79.1.1	35270
1gudA	288	5.691	c.93.1.1	83326
2dxnA	274	5.777		
1ma3A	253	9.317	c.31.1.5	78883
2qvcA	313	10.66		
2yvuA	186	10.90		
3c6qA	311	11.89		
2h3hA	313	13.27		
1vb5A	276	15.69	c.124.1.5	113604
1yc5A	246	17.11	c.31.1.5	122910
2q8zA	342	24.06		
2rjoA	332	25.43		
1shuX	182	27.21	c.62.1.1	98882
2dri	271	28.00		
1m6iA	493	28.68	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2rgyA	290	29.78		
2bi7A	384	31.03		
1vpwA	340	33.02	a.35.1.5,c.93.1.1	17087,35680
1nnt	328	33.73		
1oneA	436	34.29	c.1.11.1,d.54.1.1	29200,38844
1zu4A	320	37.03		
2z08A	137	40.30		
2e4uA	555	40.89		
2driA	271	42.28	c.93.1.1	35637
1ewkA	490	44.29	c.93.1.1	35712
1y7pA	223	45.42	c.23.1.7,d.58.18.12	122708,122709
1glcG	501	45.43	c.55.1.4,c.55.1.4	33519,33520
2fepA	289	49.38		
1zjaA	557	50.11		
1es9A	232	51.77	c.23.10.3	31340
3be4A	217	52.17		
2gwmA	200	54.44		
3cz8A	319	54.59		
2fn9A	290	58.03		
1e5pA	151	58.94	b.60.1.1	59272
2it1A	362	59.54		
1wcwA	261	62.23		
2ioyA	283	67.47		
1j0aA	325	69.95	c.79.1.1	83871
1uh6A	100	70.67	d.15.1.1	99394
1xngA	268	71.31	c.26.2.1	122186
2fb2A	340	74.91		
2yvqA	143	75.06		
1ew3A	159	77.30	b.60.1.1	27114
3b9qA	302	78.75		
2qy9A	309	80.49		
1mf7A	194	80.97	c.62.1.1	84937
1fyvA	161	81.02	c.23.2.1	31127
2gy9C	206	81.29		
2h6fB	437	82.59	a.102.4.3	136186
1fwyA	331	82.96	b.81.1.4,c.68.1.5	28064,34522
3bblA	287	84.12		
1gv4A	528	86.28	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
1a5kC	566	87.49	b.92.1.1,c.1.9.2	28425,29047
1bu6O	501	87.70	c.55.1.4,c.55.1.4	33499,33500
2zcwA	202	87.96		
1iejA	332	89.16	c.94.1.2	62328