# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1w9hA	427	1.05e-28	c.55.3.10	120785
1u04A	771	1.19e-28	b.34.14.1,c.55.3.10	107539,107540
1jx6A	342	3.109	c.93.1.1	67406
1qopB	396	4.841	c.79.1.1	35270
1gudA	288	6.684	c.93.1.1	83326
3c6qA	311	8.525		
1shuX	182	9.697	c.62.1.1	98882
2qvcA	313	10.59		
2yvuA	186	11.81		
2dxnA	274	11.92		
1j0dA	341	14.98	c.79.1.1	83902
1oneA	436	16.81	c.1.11.1,d.54.1.1	29200,38844
2h3hA	313	23.34		
1ma3A	253	25.29	c.31.1.5	78883
1yc5A	246	28.82	c.31.1.5	122910
2bi7A	384	36.52		
2z08A	137	37.08		
1bu6O	501	37.64	c.55.1.4,c.55.1.4	33499,33500
2e4uA	555	38.84		
1vpwA	340	39.62	a.35.1.5,c.93.1.1	17087,35680
2al1A	436	42.60	c.1.11.1,d.54.1.1	126949,126950
2ioyA	283	43.32		
1glcG	501	47.83	c.55.1.4,c.55.1.4	33519,33520
2gwmA	200	47.92		
1nnt	328	48.94		
1e1dA	553	48.98	e.26.1.1	43363
1es9A	232	51.86	c.23.10.3	31340
2driA	271	52.10	c.93.1.1	35637
1j6oA	268	52.87	c.1.9.12	77088
3cz8A	319	53.78		
1y7pA	223	54.31	c.23.1.7,d.58.18.12	122708,122709
2rjoA	332	55.26		
1huxA	270	56.44	c.55.1.5	61278
1m6iA	493	56.61	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1n3bA	216	61.92	c.37.1.1	79959
2dri	271	62.03		
1pfkA	320	63.35	c.89.1.1	35575
1z6rA	406	67.39	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559
1l5xA	280	72.72	c.106.1.1	77718
2qh9A	184	74.27		
4enl	436	75.55		
2oxnA	340	78.08		
2zcwA	202	78.85		
1uh6A	100	79.49	d.15.1.1	99394
2pceA	386	80.12		
1e9gA	286	80.15	b.40.5.1	59393
1vb5A	276	82.03	c.124.1.5	113604
1mf7A	194	82.07	c.62.1.1	84937
1wab	232	84.04		
2yvqA	143	84.27		
1wmhA	89	84.86	d.15.2.2	114744
1e5pA	151	85.39	b.60.1.1	59272
1zjaA	557	86.32