# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 2.63e-31 c.55.3.10 120785 1u04A 771 2.99e-31 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 3.532 c.93.1.1 67406 1gudA 288 5.369 c.93.1.1 83326 1ma3A 253 5.377 c.31.1.5 78883 2z08A 137 7.477 1huxA 270 9.787 c.55.1.5 61278 1ex2A 189 13.46 c.51.4.2 33225 1ro7A 259 15.02 c.130.1.1 97667 1glcG 501 16.49 c.55.1.4,c.55.1.4 33519,33520 2rgyA 290 17.70 1m6iA 493 20.65 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1woqA 267 21.74 c.55.1.10,c.55.1.10 109462,109463 2bi7A 384 23.06 1qopA 268 23.38 c.1.2.4 28570 1i1qB 192 24.82 c.23.16.1 61544 1z6rA 406 25.87 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1shuX 182 26.59 c.62.1.1 98882 1bu6O 501 26.60 c.55.1.4,c.55.1.4 33499,33500 2p3rA 510 27.42 c.55.1.4,c.55.1.4 139471,139472 1vmaA 306 27.62 a.24.13.1,c.37.1.10 108887,108888 3cneA 175 29.35 1yc5A 246 30.22 c.31.1.5 122910 1ido 192 32.39 2e4uA 555 32.61 1r59O 505 33.44 c.55.1.4,c.55.1.4 111697,111698 1gv4A 528 38.23 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2pfkA 320 41.31 c.89.1.1 35577 1e42A 258 42.34 b.1.10.1,d.105.1.1 22316,40792 1jqfA 334 45.07 c.94.1.2 67086 2hoeA 380 45.26 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1aw7A 194 45.57 b.40.2.2,d.15.6.1 25164,37753 2pfsA 150 46.86 1g0uE 234 48.99 d.153.1.4 41950 1e7kA 128 49.04 d.79.3.1 39813 1u7pA 164 49.63 c.108.1.17 113095 1rgyA 360 49.81 e.3.1.1 97456 3pfk 319 50.64 1i7qB 193 55.76 c.23.16.1 61902 1zu4A 320 55.88 1rypF 233 55.96 d.153.1.4 41937 1vpwA 340 56.52 a.35.1.5,c.93.1.1 17087,35680 2amhA 207 57.29 c.51.4.2 127019 1iciA 256 58.50 c.31.1.5 62266 1glaG 501 60.47 c.55.1.4,c.55.1.4 33507,33508 2qm1A 326 61.65 3tssA 194 61.77 b.40.2.2,d.15.6.1 25160,37749 2qfeA 148 66.03 1tvzA 388 66.83 c.95.1.2,c.95.1.2 107367,107368 2j01Q 141 69.54 1xpmA 396 69.66 c.95.1.2,c.95.1.2 115759,115760 1ujpA 271 74.76 c.1.2.4 99462 2it1A 362 78.85 1j8yF 297 79.84 a.24.13.1,c.37.1.10 62747,62748 1g72A 573 80.93 b.70.1.1 27680 1i39A 225 82.35 c.55.3.1 61585 2b4yA 271 82.35 c.31.1.5 127868 1sz2A 332 82.46 c.55.1.7 112169 1w0mA 226 83.62 c.1.1.1 109027 1cs0A 1073 84.04 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2itmA 484 84.07 1rgzA 363 84.26 e.3.1.1 97457 1oygA 447 84.42 b.67.2.2 93726 1wcwA 261 85.33 1mf7A 194 86.03 c.62.1.1 84937 1r1bA 59 87.62 a.16.1.3 16396