# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 8.27e-35 c.55.3.10 120785 1u04A 771 7.12e-32 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 1.458 1jx6A 342 1.581 c.93.1.1 67406 2hqbA 296 2.355 1zc6A 305 3.765 c.55.1.5,c.55.1.5 124888,124889 1usgA 346 6.370 c.93.1.1 99864 2cygA 312 7.362 c.1.8.3 131025 1xpkC 388 7.932 c.95.1.2,c.95.1.2 115747,115748 1qh8B 519 8.247 c.92.2.3 35634 1xmxA 385 9.242 c.52.1.26 115568 1fuiA 591 10.75 b.43.2.1,c.85.1.1 25674,35444 1h3gA 601 12.03 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 3d02A 303 12.93 8abpA 306 13.22 c.93.1.1 35647 1tjyA 316 13.86 c.93.1.1 107062 1z15A 344 14.63 1gca 309 16.92 1m1nA 491 16.93 c.92.2.3 78417 1l6rA 227 17.01 c.108.1.10 77768 2d1zA 436 17.62 1jyeA 349 18.87 c.93.1.1 67455 1dbqA 289 19.56 c.93.1.1 35666 8abp 306 19.77 2qv7A 337 21.34 1m1nB 522 21.84 c.92.2.3 78418 1rj9A 304 23.04 a.24.13.1,c.37.1.10 97553,97554 2o20A 332 23.91 2gwnA 452 24.18 1o2dA 371 24.78 e.22.1.2 86591 2rjoA 332 25.10 2fqxA 318 25.42 2fvyA 309 25.75 c.93.1.1 134227 2dri 271 26.85 1yslA 402 27.22 1gudA 288 27.96 c.93.1.1 83326 2h3hA 313 28.20 1gnxA 479 28.31 c.1.8.4 76241 1khvA 516 29.82 e.8.1.4 68627 2driA 271 30.08 c.93.1.1 35637 1xdpA 687 30.38 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1vljA 407 30.78 e.22.1.2 108832 2qvcA 313 31.27 3ce9A 354 32.67 1y56B 382 33.18 1jdcA 429 34.16 b.71.1.1,c.1.8.1 27789,28776 2f5tX 233 34.21 2e9lA 469 35.90 1ewkA 490 35.91 c.93.1.1 35712 1tedA 393 36.00 c.95.1.2 106807 2qu7A 288 36.15 2qh8A 302 38.69 2g4rA 160 38.75 1vqzA 341 39.13 d.224.1.3,d.104.1.3 120426,120427 2q8uA 336 39.39 1mkzA 172 39.54 c.57.1.1 84998 1mzjA 339 40.28 c.95.1.2,c.95.1.2 79700,79701 1lstA 239 40.90 c.94.1.1 35755 2ioyA 283 41.36 1oywA 523 41.38 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2fepA 289 42.09 1gveA 327 43.05 c.1.7.1 70597 1pea 385 45.17 1wcgA 464 45.68 c.1.8.4 120888 1a4iA 301 46.50 c.2.1.7,c.58.1.2 30278,33926 2c4wA 176 47.08 1bykA 255 47.11 c.93.1.1 35706 2i4iA 417 47.15 1jdpA 441 47.19 c.93.1.1 62906 1qh8A 478 47.32 c.92.2.3 35633 1v73A 342 48.03 3cb6A 444 48.93 3b9qA 302 50.03 1vpvA 300 50.06 c.119.1.1 113975 1exbA 332 51.53 c.1.7.1 28666 1s3iA 310 51.85 b.46.1.1,c.65.1.1 98435,98436 1lwjA 441 52.36 b.71.1.1,c.1.8.1 74303,74304 1dqsA 393 53.15 e.22.1.1 43347 2rebA 352 54.12 c.37.1.11,d.48.1.1 32282,38767 2qu8A 228 54.91 2aaaA 484 56.34 b.71.1.1,c.1.8.1 27777,28764 2dh2A 424 56.51 1lqaA 346 59.38 c.1.7.1 84674 1u6eA 335 60.70 c.95.1.2,c.95.1.2 119568,119569 1gz0A 253 61.63 c.116.1.1,d.79.3.3 76391,76392 1c8bA 371 62.56 c.56.1.2 59082 1ra6A 461 62.72 e.8.1.4 104879 1tvzA 388 63.31 c.95.1.2,c.95.1.2 107367,107368 1j0hA 588 63.58 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 3c61A 314 64.95 1a0iA 348 65.29 b.40.4.6,d.142.2.1 25363,41577 1w23A 360 66.14 c.67.1.4 114088 2qi2A 347 66.74 1in4A 334 67.70 a.4.5.11,c.37.1.20 62597,62598 1jq5A 370 68.24 e.22.1.2 67084 1qhoA 686 68.66 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1xzoA 174 69.26 c.47.1.10 122474 1y8qA 346 70.84 3bm1A 183 71.20 1b43A 340 73.68 a.60.7.1,c.120.1.2 18092,33362 1tfr 305 73.78 1v0wA 506 74.22 d.136.1.2,d.136.1.2 108220,108221 1goiA 499 74.83 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1dqpA 230 75.03 c.61.1.1 34069 2nrrA 159 75.50 3cq5A 369 75.92 1xpmA 396 76.12 c.95.1.2,c.95.1.2 115759,115760 1npyA 271 76.22 c.2.1.7,c.58.1.5 85995,85996 1ekeA 230 76.40 c.55.3.1 33572 1y97A 238 76.81 c.55.3.5 122773 2hm7A 310 77.64 1ht6A 405 77.94 b.71.1.1,c.1.8.1 83629,83630 2g3mA 693 78.35 3d0cA 314 79.34 3cc1A 433 81.77 2rgmA 481 82.41 2az4A 429 82.56 d.157.1.10 127597 1y7mA 164 83.36 b.160.1.1,d.7.1.1 122696,122697 1u0mA 382 84.38 c.95.1.2,c.95.1.2 107557,107558 2q62A 247 84.72 2q4zA 312 85.10 1n82A 331 85.12 c.1.8.3 91703 1musA 477 85.55 c.55.3.4 79494 1vf8A 377 88.86 c.1.8.5,d.26.3.1 120029,120030 2r98A 456 89.03 2g2cA 167 89.63 c.57.1.1 134535