# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 3.24e-36 c.55.3.10 120785 1u04A 771 4.00e-33 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 1.326 c.93.1.1 67406 2qh9A 184 1.438 2hqbA 296 1.507 1zc6A 305 3.081 c.55.1.5,c.55.1.5 124888,124889 1fuiA 591 4.990 b.43.2.1,c.85.1.1 25674,35444 1xpkC 388 6.654 c.95.1.2,c.95.1.2 115747,115748 2gwnA 452 9.742 2qv7A 337 12.73 1usgA 346 13.19 c.93.1.1 99864 2cygA 312 14.79 c.1.8.3 131025 3d02A 303 15.22 2fqxA 318 16.36 1l6rA 227 16.86 c.108.1.10 77768 8abp 306 18.08 1m1nA 491 18.89 c.92.2.3 78417 1h3gA 601 19.03 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2rjoA 332 19.53 1yslA 402 19.62 1qh8A 478 21.04 c.92.2.3 35633 2g4rA 160 21.28 3cb6A 444 22.10 2qu8A 228 22.70 1mzjA 339 24.22 c.95.1.2,c.95.1.2 79700,79701 1lwjA 441 24.27 b.71.1.1,c.1.8.1 74303,74304 1qh8B 519 24.64 c.92.2.3 35634 1w23A 360 24.75 c.67.1.4 114088 1gca 309 26.04 3ce9A 354 28.80 1z15A 344 29.02 1dbqA 289 29.66 c.93.1.1 35666 1rydA 387 29.80 c.2.1.3,d.81.1.5 118801,118802 1o2dA 371 30.11 e.22.1.2 86591 1mkzA 172 30.70 c.57.1.1 84998 2fvyA 309 30.74 c.93.1.1 134227 1rj9A 304 31.12 a.24.13.1,c.37.1.10 97553,97554 2az4A 429 32.80 d.157.1.10 127597 2driA 271 33.32 c.93.1.1 35637 1vljA 407 34.18 e.22.1.2 108832 3c61A 314 35.49 1tjyA 316 36.88 c.93.1.1 107062 1gnxA 479 37.08 c.1.8.4 76241 2q62A 247 37.41 2dri 271 38.60 1gudA 288 38.77 c.93.1.1 83326 1jdpA 441 39.91 c.93.1.1 62906 1y56B 382 40.04 2f5tX 233 42.61 3cq5A 369 42.81 1v73A 342 42.87 1ewkA 490 45.04 c.93.1.1 35712 1xmxA 385 45.66 c.52.1.26 115568 1j0hA 588 47.86 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1y7mA 164 48.97 b.160.1.1,d.7.1.1 122696,122697 8abpA 306 49.09 c.93.1.1 35647 1tvzA 388 49.46 c.95.1.2,c.95.1.2 107367,107368 1jdcA 429 49.60 b.71.1.1,c.1.8.1 27789,28776 2e9lA 469 50.50 2z61A 370 52.07 2dxnA 274 52.77 2nrrA 159 53.16 1jyeA 349 53.22 c.93.1.1 67455 1oywA 523 54.37 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1khvA 516 54.76 e.8.1.4 68627 2q8uA 336 55.28 1tfr 305 55.71 1gveA 327 55.95 c.1.7.1 70597 1ug0A 88 55.96 a.217.1.1 107822 3cpxA 321 56.32 2pl5A 366 56.59 1gz0A 253 57.22 c.116.1.1,d.79.3.3 76391,76392 1bdmA 327 57.44 c.2.1.5,d.162.1.1 30137,42104 2o20A 332 58.16 2qvcA 313 58.35 1tedA 393 58.90 c.95.1.2 106807 1ht6A 405 59.53 b.71.1.1,c.1.8.1 83629,83630 2d1zA 436 59.96 1edqA 540 60.03 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1bykA 255 61.67 c.93.1.1 35706 1pea 385 64.00 1y7tA 327 65.31 c.2.1.5,d.162.1.1 122718,122719 1j8fA 323 65.83 c.31.1.5 62738 2i4iA 417 66.00 3ceaA 346 66.74 1s3iA 310 67.15 b.46.1.1,c.65.1.1 98435,98436 2c4wA 176 68.25 1u6eA 335 68.79 c.95.1.2,c.95.1.2 119568,119569 1exbA 332 70.35 c.1.7.1 28666 1xdpA 687 70.41 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 2h3hA 313 70.55 2p3rA 510 71.23 c.55.1.4,c.55.1.4 139471,139472 1wb0A 445 71.32 c.1.8.5,d.26.3.1 120825,120826 1vpvA 300 73.11 c.119.1.1 113975 2dskA 311 73.30 1vf8A 377 74.16 c.1.8.5,d.26.3.1 120029,120030 1a0iA 348 75.03 b.40.4.6,d.142.2.1 25363,41577 1xzoA 174 76.94 c.47.1.10 122474 1fnnA 389 76.98 a.4.5.11,c.37.1.20 16129,32426 2v6oA 596 77.30 1musA 477 77.63 c.55.3.4 79494 1vqzA 341 77.89 d.224.1.3,d.104.1.3 120426,120427 2j04A 588 79.52 1ekeA 230 82.61 c.55.3.1 33572 3be7A 408 82.67 2pjkA 178 83.92 1wcgA 464 84.76 c.1.8.4 120888 2rebA 352 84.78 c.37.1.11,d.48.1.1 32282,38767 1u0mA 382 86.69 c.95.1.2,c.95.1.2 107557,107558 1frb 315 87.74 1ra6A 461 89.07 e.8.1.4 104879 2purA 292 89.49