# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 3.10e-35 c.55.3.10 120785 1u04A 771 2.97e-33 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 0.9940 c.93.1.1 67406 1usgA 346 1.692 c.93.1.1 99864 2hqbA 296 2.452 1z15A 344 2.511 2qh9A 184 4.093 1oywA 523 4.572 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1tjyA 316 8.968 c.93.1.1 107062 2fvyA 309 9.355 c.93.1.1 134227 1xmxA 385 9.882 c.52.1.26 115568 1m1nA 491 10.08 c.92.2.3 78417 1zc6A 305 10.14 c.55.1.5,c.55.1.5 124888,124889 1l6rA 227 11.24 c.108.1.10 77768 3d02A 303 12.52 1gudA 288 12.79 c.93.1.1 83326 1ewkA 490 14.36 c.93.1.1 35712 2rjoA 332 14.94 8abpA 306 15.14 c.93.1.1 35647 1qh8B 519 15.58 c.92.2.3 35634 2qu7A 288 16.05 2az4A 429 16.27 d.157.1.10 127597 1pea 385 16.67 2o20A 332 17.02 1rj9A 304 17.28 a.24.13.1,c.37.1.10 97553,97554 2gwnA 452 17.64 1xpkC 388 18.37 c.95.1.2,c.95.1.2 115747,115748 2dri 271 19.21 2ioyA 283 20.58 2qvcA 313 21.62 1dbqA 289 22.50 c.93.1.1 35666 1xzoA 174 23.71 c.47.1.10 122474 1vicA 262 23.74 c.68.1.13 100756 8abp 306 23.79 1gca 309 23.99 2iksA 293 25.31 2h3hA 313 27.56 1qh8A 478 27.77 c.92.2.3 35633 2driA 271 29.73 c.93.1.1 35637 2db3A 434 29.76 2qi2A 347 32.47 1exbA 332 32.48 c.1.7.1 28666 3d0cA 314 32.59 2z61A 370 32.72 1lstA 239 33.13 c.94.1.1 35755 2fqxA 318 33.98 2cygA 312 34.46 c.1.8.3 131025 1y8qA 346 36.23 1mzjA 339 36.50 c.95.1.2,c.95.1.2 79700,79701 1fnnA 389 36.96 a.4.5.11,c.37.1.20 16129,32426 2i4iA 417 37.15 2q8uA 336 37.25 1jyeA 349 37.38 c.93.1.1 67455 2rebA 352 38.27 c.37.1.11,d.48.1.1 32282,38767 3cb6A 444 39.20 1tedA 393 39.64 c.95.1.2 106807 1ajsA 412 39.80 c.67.1.1 34276 2e9lA 469 41.58 2p3rA 510 42.04 c.55.1.4,c.55.1.4 139471,139472 2r8wA 332 42.53 2f5tX 233 42.69 1in4A 334 43.45 a.4.5.11,c.37.1.20 62597,62598 2rgmA 481 43.78 1zsxA 347 43.95 2fepA 289 44.21 1qhoA 686 44.85 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 3b9qA 302 47.19 1gveA 327 47.80 c.1.7.1 70597 1fuiA 591 48.00 b.43.2.1,c.85.1.1 25674,35444 1jdcA 429 48.06 b.71.1.1,c.1.8.1 27789,28776 1tfr 305 48.34 1gnxA 479 48.78 c.1.8.4 76241 1w23A 360 49.22 c.67.1.4 114088 1mkzA 172 49.49 c.57.1.1 84998 2i7hA 189 49.76 1a0iA 348 51.31 b.40.4.6,d.142.2.1 25363,41577 2d1zA 436 52.21 1npyA 271 52.21 c.2.1.7,c.58.1.5 85995,85996 1h3gA 601 53.04 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1m1nB 522 53.29 c.92.2.3 78418 1rydA 387 53.37 c.2.1.3,d.81.1.5 118801,118802 2ebdA 309 54.85 1ug0A 88 55.19 a.217.1.1 107822 1jdpA 441 58.57 c.93.1.1 62906 1gvnB 287 59.06 c.37.1.21 76354 3brqA 296 59.25 2q62A 247 60.03 2e4uA 555 60.13 1peaA 385 61.41 c.93.1.1 35662 1gz0A 253 61.77 c.116.1.1,d.79.3.3 76391,76392 3b5eA 223 61.79 2qv7A 337 61.89 3ce9A 354 62.69 2nrrA 159 62.92 2q4zA 312 64.64 3c61A 314 65.08 2purA 292 65.10 2g3mA 693 65.73 1nnfA 309 66.18 c.94.1.1 85903 1u4nA 310 67.96 c.69.1.2 113021 3ceaA 346 68.90 2q7wA 396 69.62 2je6B 250 69.72 3ctpA 330 70.72 1fdr 248 71.02 1wzaA 488 71.58 b.71.1.1,c.1.8.1 121489,121490 1vljA 407 72.43 e.22.1.2 108832 2qu8A 228 72.86 2fn9A 290 74.74 2qy9A 309 76.34 2i1qA 322 77.33 a.60.4.1,c.37.1.11 136984,136985 2aaaA 484 77.94 b.71.1.1,c.1.8.1 27777,28764 2dskA 311 78.17 2cstA 411 78.31 c.67.1.1 34273 3cpxA 321 78.61 1y7mA 164 80.13 b.160.1.1,d.7.1.1 122696,122697 1cfr 285 81.87 2g4rA 160 82.38 1jq5A 370 83.25 e.22.1.2 67084 1yslA 402 83.58 1lwjA 441 84.86 b.71.1.1,c.1.8.1 74303,74304 2ghpA 292 85.36 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1io2A 213 85.55 c.55.3.1 62612