# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 4.11e-36 c.55.3.10 120785 1u04A 771 4.80e-34 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 1.115 c.93.1.1 67406 1usgA 346 1.786 c.93.1.1 99864 2hqbA 296 2.374 1z15A 344 2.421 2qh9A 184 4.664 1oywA 523 6.552 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1xmxA 385 7.856 c.52.1.26 115568 1zc6A 305 8.037 c.55.1.5,c.55.1.5 124888,124889 1ewkA 490 10.46 c.93.1.1 35712 1l6rA 227 10.91 c.108.1.10 77768 2gwnA 452 11.61 2fvyA 309 11.62 c.93.1.1 134227 2rjoA 332 11.81 1tjyA 316 12.12 c.93.1.1 107062 2az4A 429 13.94 d.157.1.10 127597 1xzoA 174 13.99 c.47.1.10 122474 1rj9A 304 14.24 a.24.13.1,c.37.1.10 97553,97554 1qh8B 519 14.39 c.92.2.3 35634 1gudA 288 14.42 c.93.1.1 83326 1m1nA 491 14.99 c.92.2.3 78417 8abpA 306 16.06 c.93.1.1 35647 2dri 271 18.62 2qu7A 288 21.43 1xpkC 388 21.58 c.95.1.2,c.95.1.2 115747,115748 1gnxA 479 22.11 c.1.8.4 76241 3d02A 303 22.23 1pea 385 22.93 2o20A 332 23.13 3cb6A 444 23.14 2e9lA 469 25.99 8abp 306 27.05 2ioyA 283 27.81 2qvcA 313 27.92 2driA 271 28.43 c.93.1.1 35637 2h3hA 313 30.01 2rgmA 481 30.10 1exbA 332 30.86 c.1.7.1 28666 2cygA 312 30.88 c.1.8.3 131025 1mzjA 339 31.05 c.95.1.2,c.95.1.2 79700,79701 1dbqA 289 32.35 c.93.1.1 35666 1y8qA 346 32.65 2iksA 293 32.83 2rebA 352 33.32 c.37.1.11,d.48.1.1 32282,38767 1mkzA 172 35.20 c.57.1.1 84998 1tedA 393 35.46 c.95.1.2 106807 2z61A 370 35.55 2fqxA 318 35.57 1qhoA 686 36.17 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2i4iA 417 38.95 1fnnA 389 38.98 a.4.5.11,c.37.1.20 16129,32426 1gca 309 39.44 2q8uA 336 39.72 1fuiA 591 40.45 b.43.2.1,c.85.1.1 25674,35444 1npyA 271 40.50 c.2.1.7,c.58.1.5 85995,85996 1lstA 239 41.27 c.94.1.1 35755 1gvnB 287 41.70 c.37.1.21 76354 1tfr 305 42.51 2f5tX 233 44.23 1jdcA 429 44.27 b.71.1.1,c.1.8.1 27789,28776 1fdr 248 44.82 2qv7A 337 45.07 2fepA 289 45.95 1cfr 285 46.44 2ebdA 309 47.03 1m1nB 522 47.65 c.92.2.3 78418 1vicA 262 47.85 c.68.1.13 100756 2g4rA 160 48.31 1o2dA 371 48.57 e.22.1.2 86591 1vljA 407 49.74 e.22.1.2 108832 1in4A 334 50.66 a.4.5.11,c.37.1.20 62597,62598 1ajsA 412 50.75 c.67.1.1 34276 2p3rA 510 50.93 c.55.1.4,c.55.1.4 139471,139472 2qi2A 347 51.25 1zsxA 347 51.27 1jyeA 349 51.37 c.93.1.1 67455 2db3A 434 52.27 3ce9A 354 53.13 2r8wA 332 53.47 2d1zA 436 55.19 1w23A 360 56.10 c.67.1.4 114088 2e4uA 555 56.23 1ug0A 88 56.41 a.217.1.1 107822 2g3mA 693 57.33 2pqmA 343 57.59 1u4nA 310 57.81 c.69.1.2 113021 1gz0A 253 58.20 c.116.1.1,d.79.3.3 76391,76392 2q4zA 312 58.31 1h3gA 601 59.44 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 3b9qA 302 59.92 1vqzA 341 60.02 d.224.1.3,d.104.1.3 120426,120427 1rydA 387 60.19 c.2.1.3,d.81.1.5 118801,118802 1wcgA 464 60.62 c.1.8.4 120888 1wzaA 488 61.69 b.71.1.1,c.1.8.1 121489,121490 1lwjA 441 62.88 b.71.1.1,c.1.8.1 74303,74304 2q62A 247 62.93 3b5eA 223 64.19 1xdpA 687 65.39 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 3cq5A 369 65.58 3d0cA 314 65.61 1l0bA 229 66.30 c.15.1.3,c.15.1.3 73391,73392 1y7mA 164 67.87 b.160.1.1,d.7.1.1 122696,122697 1tqhA 247 68.30 c.69.1.29 107225 1gveA 327 68.44 c.1.7.1 70597 2o0rA 411 69.08 2aaaA 484 70.03 b.71.1.1,c.1.8.1 27777,28764 1qh8A 478 70.17 c.92.2.3 35633 1v0wA 506 70.26 d.136.1.2,d.136.1.2 108220,108221 2nrrA 159 71.21 2qu8A 228 71.36 1khvA 516 71.97 e.8.1.4 68627 1goiA 499 72.41 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1nnfA 309 73.34 c.94.1.1 85903 3brqA 296 73.83 1jdpA 441 74.27 c.93.1.1 62906 1y97A 238 75.38 c.55.3.5 122773 2purA 292 75.66 2r2nA 425 76.26 1jq5A 370 76.32 e.22.1.2 67084 3c61A 314 77.65 1dqsA 393 77.70 e.22.1.1 43347 2qh8A 302 77.91 2pl5A 366 78.14 1e4mM 501 78.20 c.1.8.4 59226 1peaA 385 78.95 c.93.1.1 35662 2i7hA 189 80.45 2i1qA 322 81.15 a.60.4.1,c.37.1.11 136984,136985 1pcxA 810 82.28 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1bg4A 302 84.63 c.1.8.3 28806 1frb 315 87.30 1v73A 342 88.25 1a0iA 348 88.39 b.40.4.6,d.142.2.1 25363,41577 3cpxA 321 88.63 2hm7A 310 88.79