# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.62e-24 c.55.3.10 120785 1u04A 771 2.41e-22 b.34.14.1,c.55.3.10 107539,107540 8abp 306 0.9234 1jx6A 342 0.9848 c.93.1.1 67406 1gudA 288 1.681 c.93.1.1 83326 2ioyA 283 1.881 2fn9A 290 2.742 3b9qA 302 3.388 1gca 309 3.713 2c4wA 176 3.904 2dri 271 4.279 3d02A 303 4.535 1xmxA 385 5.356 c.52.1.26 115568 2qvcA 313 5.621 8abpA 306 5.927 c.93.1.1 35647 2driA 271 6.116 c.93.1.1 35637 1jyeA 349 6.653 c.93.1.1 67455 2qu7A 288 6.893 2o20A 332 7.207 2fvyA 309 7.405 c.93.1.1 134227 1m1nB 522 7.424 c.92.2.3 78418 2iksA 293 8.517 2rjoA 332 8.566 2h3hA 313 8.579 1tjyA 316 9.254 c.93.1.1 107062 3brsA 289 9.580 1qh8B 519 9.698 c.92.2.3 35634 1dbqA 289 9.734 c.93.1.1 35666 2qh9A 184 9.782 1pea 385 10.44 1z15A 344 10.51 2qv7A 337 11.06 1bykA 255 11.11 c.93.1.1 35706 2r8wA 332 11.24 3d0cA 314 11.50 2r91A 286 12.24 2qh8A 302 12.63 1uqrA 154 12.81 c.23.13.1 99779 3c6qA 311 13.26 2hqbA 296 13.28 1usgA 346 13.44 c.93.1.1 99864 1m1nA 491 14.37 c.92.2.3 78417 1gtzA 156 16.08 c.23.13.1 70539 1ewkA 490 16.22 c.93.1.1 35712 1rj9A 304 16.77 a.24.13.1,c.37.1.10 97553,97554 2og2A 359 19.03 2fqxA 318 19.53 3ctpA 330 19.80 1io2A 213 21.58 c.55.3.1 62612 2e4uA 555 21.59 2qy9A 309 22.16 2i4iA 417 24.43 1l6rA 227 24.71 c.108.1.10 77768 3ce9A 354 25.58 2itmA 484 28.20 1lwjA 441 30.34 b.71.1.1,c.1.8.1 74303,74304 1peaA 385 31.52 c.93.1.1 35662 2fepA 289 32.07 2vc6A 292 33.91 3brqA 296 35.36 3cpxA 321 35.61 1h05A 146 37.46 c.23.13.1 76433 1o5kA 306 38.03 c.1.10.1 92504 2purA 292 38.70 1w6tA 444 39.45 c.1.11.1,d.54.1.1 120670,120671 1xpkC 388 40.55 c.95.1.2,c.95.1.2 115747,115748 1rrmA 386 41.73 e.22.1.2 105081 1oywA 523 42.96 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1ht6A 405 43.56 b.71.1.1,c.1.8.1 83629,83630 1fuiA 591 44.79 b.43.2.1,c.85.1.1 25674,35444 1dlcA 584 45.46 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2q4zA 312 45.47 2bgxA 261 45.76 a.20.1.1,d.118.1.1 128504,128505 1yslA 402 46.28 2ehhA 294 46.32 1mi3A 322 46.35 c.1.7.1 91274 1j96A 323 46.54 c.1.7.1 71616 1u0mA 382 50.82 c.95.1.2,c.95.1.2 107557,107558 1f74A 293 51.02 c.1.10.1 29079 2ihtA 573 54.94 2bmxA 195 55.42 c.47.1.10 128817 1vljA 407 55.43 e.22.1.2 108832 2z26A 347 55.80 1yloA 348 56.09 b.49.3.1,c.56.5.4 123659,123660 2e9lA 469 57.73 1gnxA 479 58.53 c.1.8.4 76241 1rvv1 154 59.41 1lqaA 346 60.57 c.1.7.1 84674 1sg0A 230 61.40 c.23.5.3 118955 2g4rA 160 61.46 1hl2A 297 66.52 c.1.10.1 83581 2p3rA 510 66.84 c.55.1.4,c.55.1.4 139471,139472 2ebn 289 68.40 1dqsA 393 69.29 e.22.1.1 43347 2v9dA 343 70.60 1wvqA 167 70.66 1qgoA 264 70.82 c.92.1.2 35596 3b5eA 223 71.09 1frb 315 73.43 1yb0A 159 73.79 d.118.1.1 122865 2eg6A 347 74.89 1s1pA 331 77.43 c.1.7.1 98350 1vggA 161 77.65 d.256.1.1 113647 2nxfA 322 78.89 1xdpA 687 79.66 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1xpmA 396 80.04 c.95.1.2,c.95.1.2 115759,115760 1qh8A 478 80.35 c.92.2.3 35633 1iv8A 720 81.54 b.71.1.1,c.1.8.1 76842,76843 2ywiA 196 82.33 1oroA 213 83.38 c.61.1.1 34093 1musA 477 84.15 c.55.3.4 79494 1xkyA 301 84.24 c.1.10.1 122094 1tqxA 227 84.41 c.1.2.2 112614 1exbA 332 84.58 c.1.7.1 28666 1bg4A 302 84.65 c.1.8.3 28806 2qwxA 231 85.72 1mkzA 172 86.08 c.57.1.1 84998 1o2dA 371 86.60 e.22.1.2 86591 2pia 321 87.67 1d7uA 433 87.84 c.67.1.4 34439 1jq5A 370 89.06 e.22.1.2 67084