# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 4.96e-37 c.55.3.10 120785 1u04A 771 4.60e-35 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 1.099 c.93.1.1 67406 2gwnA 452 2.587 2hqbA 296 4.247 2qh9A 184 4.436 1usgA 346 6.297 c.93.1.1 99864 1z15A 344 9.261 2cygA 312 9.671 c.1.8.3 131025 3d02A 303 10.67 1zc6A 305 10.85 c.55.1.5,c.55.1.5 124888,124889 1rj9A 304 12.56 a.24.13.1,c.37.1.10 97553,97554 8abpA 306 13.28 c.93.1.1 35647 2qu7A 288 14.86 1fuiA 591 15.41 b.43.2.1,c.85.1.1 25674,35444 1vqzA 341 18.27 d.224.1.3,d.104.1.3 120426,120427 1gz0A 253 18.72 c.116.1.1,d.79.3.3 76391,76392 1pea 385 19.10 1npyA 271 19.24 c.2.1.7,c.58.1.5 85995,85996 2j04A 588 19.90 1xmxA 385 20.02 c.52.1.26 115568 2az4A 429 20.17 d.157.1.10 127597 2qi2A 347 20.89 2rjoA 332 20.95 2citA 282 22.18 c.1.8.3 130499 1l6rA 227 22.37 c.108.1.10 77768 1gudA 288 22.64 c.93.1.1 83326 1s3iA 310 23.07 b.46.1.1,c.65.1.1 98435,98436 1exbA 332 23.30 c.1.7.1 28666 1tjyA 316 24.07 c.93.1.1 107062 8abp 306 25.14 2qv7A 337 25.16 2ioyA 283 25.31 2fqxA 318 25.81 1gnxA 479 26.11 c.1.8.4 76241 1dbqA 289 26.70 c.93.1.1 35666 2r8wA 332 26.85 1qh8B 519 26.89 c.92.2.3 35634 1m1nA 491 28.09 c.92.2.3 78417 3d0cA 314 29.00 2o20A 332 30.33 1h3gA 601 30.34 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1jyeA 349 30.76 c.93.1.1 67455 1gveA 327 32.06 c.1.7.1 70597 2d1zA 436 32.21 1lqaA 346 32.59 c.1.7.1 84674 1ewkA 490 32.59 c.93.1.1 35712 2dri 271 32.75 3ce9A 354 33.40 1gvnB 287 33.52 c.37.1.21 76354 2r98A 456 33.80 1vljA 407 35.16 e.22.1.2 108832 2qvcA 313 35.32 1mkzA 172 35.64 c.57.1.1 84998 3ctpA 330 36.30 1edgA 380 36.71 c.1.8.3 28807 1jdcA 429 36.88 b.71.1.1,c.1.8.1 27789,28776 2h3hA 313 37.85 3b9qA 302 38.12 1xpkC 388 39.58 c.95.1.2,c.95.1.2 115747,115748 1o2dA 371 40.21 e.22.1.2 86591 2driA 271 40.27 c.93.1.1 35637 2qu8A 228 42.23 3b5eA 223 43.33 2g3mA 693 46.17 1mzjA 339 47.37 c.95.1.2,c.95.1.2 79700,79701 1bg4A 302 48.64 c.1.8.3 28806 1khvA 516 48.81 e.8.1.4 68627 1peaA 385 50.29 c.93.1.1 35662 2c4wA 176 50.56 2fvyA 309 51.42 c.93.1.1 134227 1g5cA 170 51.69 c.53.2.1 60264 2e4uA 555 53.63 1jdpA 441 53.67 c.93.1.1 62906 1n82A 331 53.78 c.1.8.3 91703 2rebA 352 53.84 c.37.1.11,d.48.1.1 32282,38767 2ebdA 309 54.21 1wvqA 167 54.79 2p3rA 510 56.28 c.55.1.4,c.55.1.4 139471,139472 2z61A 370 57.01 1y7mA 164 57.09 b.160.1.1,d.7.1.1 122696,122697 2o0tA 467 57.96 2pn1A 331 58.12 2e9lA 469 58.19 1musA 477 58.55 c.55.3.4 79494 2v9dA 343 59.95 1qopA 268 60.91 c.1.2.4 28570 1bykA 255 60.92 c.93.1.1 35706 1lwjA 441 61.22 b.71.1.1,c.1.8.1 74303,74304 1i1wA 303 61.82 c.1.8.3 76732 3ceaA 346 62.83 1oywA 523 63.39 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1v0lA 313 63.51 c.1.8.3 108207 1wkyA 464 63.64 b.18.1.31,c.1.8.3 120992,120993 2qh8A 302 63.74 1qhoA 686 64.45 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1u4nA 310 65.12 c.69.1.2 113021 1a0iA 348 65.19 b.40.4.6,d.142.2.1 25363,41577 1wzaA 488 65.56 b.71.1.1,c.1.8.1 121489,121490 2nrrA 159 66.17 1tedA 393 69.39 c.95.1.2 106807 2vc6A 292 70.04 1y56B 382 72.38 1rydA 387 72.84 c.2.1.3,d.81.1.5 118801,118802 2q7wA 396 73.06 2ehhA 294 73.72 2fepA 289 74.00 2aaaA 484 74.21 b.71.1.1,c.1.8.1 27777,28764 1edg 380 76.59 2dskA 311 76.72 2r91A 286 76.97 1yslA 402 77.09 2q8uA 336 77.93 2q62A 247 78.55 1ur1A 378 80.01 c.1.8.3 99804 2i1qA 322 80.83 a.60.4.1,c.37.1.11 136984,136985 1vbuA 328 80.88 c.1.8.3 119963 1jq5A 370 81.42 e.22.1.2 67084 1i2kA 269 81.77 e.17.1.1 90661 1thg 544 83.08 2nxfA 322 83.91 1ug0A 88 84.38 a.217.1.1 107822 2f5tX 233 84.44 2otnA 308 86.12 3c61A 314 87.23 1w23A 360 88.27 c.67.1.4 114088 1m7xA 617 88.70 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2guyA 478 89.98 b.71.1.1,c.1.8.1 135754,135755