# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.07e-33 c.55.3.10 120785 1u04A 771 1.11e-32 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 1.017 c.93.1.1 67406 1gnxA 479 1.768 c.1.8.4 76241 2qh9A 184 6.845 1qh8B 519 7.034 c.92.2.3 35634 2cygA 312 7.977 c.1.8.3 131025 1rj9A 304 8.116 a.24.13.1,c.37.1.10 97553,97554 1xkyA 301 8.665 c.1.10.1 122094 1qh8A 478 8.905 c.92.2.3 35633 1z15A 344 10.62 1a4iA 301 11.13 c.2.1.7,c.58.1.2 30278,33926 2z61A 370 11.28 2hqbA 296 11.69 1h3gA 601 11.80 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2qu7A 288 12.37 2g3mA 693 12.48 1m1nB 522 13.56 c.92.2.3 78418 3cb6A 444 15.03 1edgA 380 15.15 c.1.8.3 28807 2purA 292 15.89 1gudA 288 16.11 c.93.1.1 83326 2v3vA 723 16.73 1musA 477 16.80 c.55.3.4 79494 1exbA 332 16.81 c.1.7.1 28666 1xpkC 388 17.11 c.95.1.2,c.95.1.2 115747,115748 1xmxA 385 18.66 c.52.1.26 115568 1dbqA 289 19.03 c.93.1.1 35666 1s3iA 310 19.41 b.46.1.1,c.65.1.1 98435,98436 2r8wA 332 20.90 2guyA 478 21.25 b.71.1.1,c.1.8.1 135754,135755 3d02A 303 21.56 8abpA 306 21.82 c.93.1.1 35647 2ojpA 292 22.18 1eexA 554 22.19 c.1.19.3 29650 2j69A 695 23.59 1q7zA 566 23.66 c.1.21.2,c.1.26.1 96090,96091 2r6r1 338 24.50 1uokA 558 24.61 b.71.1.1,c.1.8.1 27801,28788 2rjoA 332 24.88 1khvA 516 25.37 e.8.1.4 68627 2o0tA 467 25.40 1mzjA 339 25.54 c.95.1.2,c.95.1.2 79700,79701 1tjyA 316 25.88 c.93.1.1 107062 1u6eA 335 26.84 c.95.1.2,c.95.1.2 119568,119569 2h3hA 313 26.95 2gwnA 452 27.49 1m7xA 617 27.57 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2bhuA 602 28.27 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2o20A 332 28.50 1vljA 407 28.58 e.22.1.2 108832 2q8uA 336 29.24 1tedA 393 29.74 c.95.1.2 106807 1ur1A 378 29.76 c.1.8.3 99804 3bk2A 562 29.93 1u4nA 310 30.32 c.69.1.2 113021 2o9pA 454 30.34 1zz1A 369 30.58 2og2A 359 31.18 2bs9A 503 31.41 b.71.1.2,c.1.8.3 129062,129063 1jyeA 349 31.79 c.93.1.1 67455 1o2dA 371 32.00 e.22.1.2 86591 3d0cA 314 32.26 3ctpA 330 32.93 1wzlA 585 32.93 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1y56B 382 33.22 1eu1A 780 33.54 b.52.2.2,c.81.1.1 26903,35311 2qvcA 313 33.76 1zjaA 557 34.14 1usgA 346 34.40 c.93.1.1 99864 8abp 306 34.88 1mi3A 322 35.29 c.1.7.1 91274 3b9qA 302 35.69 2ez9A 603 35.75 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1vqzA 341 36.15 d.224.1.3,d.104.1.3 120426,120427 2f5tX 233 36.51 2d1zA 436 37.76 2vapA 364 38.13 2e18A 257 40.12 1lt8A 406 42.84 c.1.26.1 78186 1j0hA 588 43.04 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1g5aA 628 43.10 b.71.1.1,c.1.8.1 65152,65153 2rgmA 481 43.44 1cvrA 435 43.48 b.1.18.12,c.17.1.2 21949,31006 2az4A 429 43.98 d.157.1.10 127597 1mdbA 539 45.42 e.23.1.1 79008 2cstA 411 46.93 c.67.1.1 34273 2e1vA 454 47.01 3b5eA 223 47.02 3ceaA 346 47.36 3cq5A 369 47.37 1gveA 327 48.74 c.1.7.1 70597 2citA 282 49.58 c.1.8.3 130499 2pl5A 366 49.98 2ioyA 283 51.12 2hf2A 283 51.50 2zc0A 407 52.86 1i88A 389 53.06 c.95.1.2,c.95.1.2 66070,66071 1m1nA 491 53.27 c.92.2.3 78417 2ffuA 501 53.52 2debA 653 54.40 1l5aA 436 54.66 c.43.1.2,c.43.1.2 75923,75924 2a0uA 383 55.01 1bykA 255 55.43 c.93.1.1 35706 2fepA 289 56.39 2e4uA 555 57.09 2qruA 274 57.28 1wstA 417 58.10 c.67.1.1 121244 2e8yA 718 58.22 1zc6A 305 59.13 c.55.1.5,c.55.1.5 124888,124889 1vbuA 328 59.45 c.1.8.3 119963 2vr4A 846 59.92 2cfmA 561 59.94 1npyA 271 60.24 c.2.1.7,c.58.1.5 85995,85996 1j32A 388 60.92 c.67.1.1 77067 2qy9A 309 61.53 2a5yB 549 61.66 2qv7A 337 62.13 2nxfA 322 63.13 1hl2A 297 63.45 c.1.10.1 83581 1bg4A 302 63.72 c.1.8.3 28806 2gb3A 409 63.73 c.67.1.1 134903 1gz0A 253 64.82 c.116.1.1,d.79.3.3 76391,76392 1wzaA 488 67.08 b.71.1.1,c.1.8.1 121489,121490 2q4zA 312 68.81 1fuiA 591 70.13 b.43.2.1,c.85.1.1 25674,35444 2pgfA 371 70.63 1zu0A 529 70.77 2q8nA 460 71.33 1xzoA 174 73.11 c.47.1.10 122474 1u0mA 382 73.36 c.95.1.2,c.95.1.2 107557,107558 2pn1A 331 73.37 2qj8A 332 73.69 2fn9A 290 74.69 1ceoA 343 75.42 c.1.8.3 28808 1mkzA 172 75.47 c.57.1.1 84998 1vpvA 300 76.09 c.119.1.1 113975 1edg 380 76.58 2pajA 492 77.19 1ra6A 461 77.92 e.8.1.4 104879 1pea 385 79.86 2dri 271 81.25 1c8bA 371 81.42 c.56.1.2 59082 2qh8A 302 81.66 1iv8A 720 81.84 b.71.1.1,c.1.8.1 76842,76843 2p8uA 478 82.41 1uok 558 82.57 2v9dA 343 84.11 1lstA 239 84.33 c.94.1.1 35755 2bgxA 261 84.47 a.20.1.1,d.118.1.1 128504,128505 2ddxA 333 84.63 2fqxA 318 84.66 1wl4A 397 84.86 2qeeA 437 85.63 2qu8A 228 87.17 1cfr 285 87.40 1lqaA 346 87.77 c.1.7.1 84674 1jdcA 429 88.04 b.71.1.1,c.1.8.1 27789,28776 1c7qA 445 89.39 c.80.1.2 35307