# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 5.02e-41 c.55.3.10 120785 1u04A 771 2.78e-38 b.34.14.1,c.55.3.10 107539,107540 2qh9A 184 3.398 2hqbA 296 3.550 1jx6A 342 8.897 c.93.1.1 67406 2cygA 312 9.772 c.1.8.3 131025 1z15A 344 10.45 1m1nA 491 11.63 c.92.2.3 78417 2eg6A 347 12.43 3cb6A 444 14.40 3d0cA 314 14.69 1usgA 346 15.62 c.93.1.1 99864 1zc6A 305 16.78 c.55.1.5,c.55.1.5 124888,124889 2purA 292 17.56 1iv8A 720 17.64 b.71.1.1,c.1.8.1 76842,76843 2fqxA 318 19.59 1l6rA 227 19.91 c.108.1.10 77768 1a0iA 348 20.89 b.40.4.6,d.142.2.1 25363,41577 1gveA 327 21.75 c.1.7.1 70597 2rgmA 481 21.94 1ua7A 422 22.68 b.71.1.1,c.1.8.1 107759,107760 1gnxA 479 23.39 c.1.8.4 76241 1arb 268 25.09 2q4zA 312 25.23 2r8wA 332 27.65 2aaaA 484 29.70 b.71.1.1,c.1.8.1 27777,28764 2gwnA 452 31.00 1u4nA 310 31.14 c.69.1.2 113021 1pea 385 31.65 1npyA 271 32.01 c.2.1.7,c.58.1.5 85995,85996 2z61A 370 32.96 1qh8A 478 33.09 c.92.2.3 35633 1y7mA 164 33.26 b.160.1.1,d.7.1.1 122696,122697 2hm7A 310 34.44 1jdcA 429 34.60 b.71.1.1,c.1.8.1 27789,28776 1y7tA 327 35.22 c.2.1.5,d.162.1.1 122718,122719 2pl5A 366 38.58 2rjoA 332 39.72 2r6r1 338 39.98 1ra6A 461 40.84 e.8.1.4 104879 2e9lA 469 42.07 1ug0A 88 42.62 a.217.1.1 107822 1y56B 382 42.76 1lstA 239 44.92 c.94.1.1 35755 2qruA 274 45.04 2g3mA 693 46.61 1exbA 332 49.21 c.1.7.1 28666 1oywA 523 49.41 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1bdmA 327 50.09 c.2.1.5,d.162.1.1 30137,42104 1gvnB 287 51.57 c.37.1.21 76354 1rydA 387 51.99 c.2.1.3,d.81.1.5 118801,118802 3d02A 303 52.37 8abp 306 52.72 1wb0A 445 53.95 c.1.8.5,d.26.3.1 120825,120826 2qu8A 228 54.45 2c4wA 176 55.08 2atsA 292 55.47 c.1.10.1 127306 2dtvA 397 56.57 1dbqA 289 57.64 c.93.1.1 35666 2f5tX 233 58.36 2a0uA 383 59.38 2r91A 286 59.57 2vc6A 292 60.13 2q62A 247 61.32 2ojpA 292 61.42 1ewkA 490 61.59 c.93.1.1 35712 2p3rA 510 62.10 c.55.1.4,c.55.1.4 139471,139472 1gakA 141 62.31 a.19.1.1 16415 1e4mM 501 62.55 c.1.8.4 59226 2v9dA 343 62.87 2dskA 311 63.26 2qi2A 347 64.19 2ghpA 292 65.43 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1fnnA 389 65.93 a.4.5.11,c.37.1.20 16129,32426 1thg 544 66.97 3be7A 408 67.14 2az4A 429 67.73 d.157.1.10 127597 1khcA 147 67.80 b.34.9.2 68608 1z2lA 423 69.28 c.56.5.4,d.58.19.1 124383,124384 1o2dA 371 69.92 e.22.1.2 86591 1tezA 474 70.25 a.99.1.1,c.28.1.1 112409,112410 1khvA 516 70.91 e.8.1.4 68627 1qhoA 686 71.58 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1gz0A 253 73.60 c.116.1.1,d.79.3.3 76391,76392 1qh8B 519 74.02 c.92.2.3 35634 3ceaA 346 78.16 1h3gA 601 81.04 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1xzoA 174 81.36 c.47.1.10 122474 1tfr 305 81.60 1xkyA 301 81.68 c.1.10.1 122094 2pia 321 81.79 1a4iA 301 83.20 c.2.1.7,c.58.1.2 30278,33926 1wstA 417 83.47 c.67.1.1 121244 1zsxA 347 83.53 1wcgA 464 85.02 c.1.8.4 120888 2ywvA 244 85.64 1lt8A 406 85.72 c.1.26.1 78186 1oroA 213 85.77 c.61.1.1 34093 2g4rA 160 86.40 2otnA 308 86.73 2r98A 456 87.49 2gqrA 237 89.67