# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 4.15e-38 c.55.3.10 120785 1u04A 771 5.06e-36 b.34.14.1,c.55.3.10 107539,107540 2hqbA 296 1.251 1jx6A 342 1.318 c.93.1.1 67406 2qh9A 184 3.348 1m1nA 491 3.917 c.92.2.3 78417 1zc6A 305 8.171 c.55.1.5,c.55.1.5 124888,124889 1a0iA 348 9.99 b.40.4.6,d.142.2.1 25363,41577 1l6rA 227 10.96 c.108.1.10 77768 2fqxA 318 11.42 1qh8A 478 11.64 c.92.2.3 35633 2qi2A 347 12.13 1xpkC 388 13.83 c.95.1.2,c.95.1.2 115747,115748 1z15A 344 18.68 2az4A 429 19.13 d.157.1.10 127597 1w23A 360 19.49 c.67.1.4 114088 2qu8A 228 19.56 1usgA 346 20.59 c.93.1.1 99864 1fuiA 591 21.09 b.43.2.1,c.85.1.1 25674,35444 2qv7A 337 21.63 3d02A 303 21.68 8abpA 306 21.72 c.93.1.1 35647 2gwnA 452 22.08 2cygA 312 24.13 c.1.8.3 131025 1u4nA 310 24.92 c.69.1.2 113021 1xzoA 174 25.45 c.47.1.10 122474 1dbqA 289 26.14 c.93.1.1 35666 2g3mA 693 26.42 2fvyA 309 27.04 c.93.1.1 134227 2qu7A 288 27.27 1lwjA 441 27.51 b.71.1.1,c.1.8.1 74303,74304 2purA 292 28.52 2r8wA 332 32.48 1yslA 402 32.60 1tjyA 316 33.38 c.93.1.1 107062 2r91A 286 33.45 1gveA 327 34.44 c.1.7.1 70597 3cq5A 369 34.80 1ewkA 490 35.24 c.93.1.1 35712 3cb6A 444 35.60 1gvnB 287 35.98 c.37.1.21 76354 2rjoA 332 36.50 1qh8B 519 37.25 c.92.2.3 35634 1xmxA 385 39.17 c.52.1.26 115568 2rgmA 481 39.22 1y7mA 164 39.43 b.160.1.1,d.7.1.1 122696,122697 1pea 385 39.74 3d0cA 314 40.95 1gca 309 41.18 3b5eA 223 41.27 1oywA 523 41.37 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1h3gA 601 43.30 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1khcA 147 43.59 b.34.9.2 68608 1jdpA 441 43.81 c.93.1.1 62906 2qvcA 313 44.08 3c61A 314 44.41 1npyA 271 45.13 c.2.1.7,c.58.1.5 85995,85996 2p3rA 510 45.74 c.55.1.4,c.55.1.4 139471,139472 2o20A 332 46.25 2z61A 370 46.85 1thg 544 47.52 1gnxA 479 48.45 c.1.8.4 76241 1tfr 305 48.49 2c4wA 176 50.11 1fnnA 389 50.33 a.4.5.11,c.37.1.20 16129,32426 8abp 306 50.45 2r98A 456 51.72 1wstA 417 54.76 c.67.1.1 121244 2driA 271 54.96 c.93.1.1 35637 1lstA 239 55.61 c.94.1.1 35755 1rydA 387 55.62 c.2.1.3,d.81.1.5 118801,118802 1v73A 342 57.14 1jyeA 349 57.41 c.93.1.1 67455 1exbA 332 57.93 c.1.7.1 28666 2a0uA 383 60.05 1jdcA 429 61.42 b.71.1.1,c.1.8.1 27789,28776 2v9dA 343 62.43 1bdmA 327 63.84 c.2.1.5,d.162.1.1 30137,42104 2dtvA 397 64.99 1bykA 255 65.03 c.93.1.1 35706 1m1nB 522 65.65 c.92.2.3 78418 1qhoA 686 66.84 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 3ceaA 346 67.19 1gudA 288 67.86 c.93.1.1 83326 1r59O 505 67.98 c.55.1.4,c.55.1.4 111697,111698 2dri 271 68.73 2e9lA 469 68.79 2gb3A 409 68.83 c.67.1.1 134903 1lqaA 346 71.72 c.1.7.1 84674 2zc0A 407 71.93 3ce9A 354 73.33 2eg6A 347 74.34 2ghpA 292 76.54 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2vc6A 292 77.42 2ioyA 283 78.48 1zsxA 347 79.26 1ug0A 88 79.41 a.217.1.1 107822 2dskA 311 79.88 2hm7A 310 80.20 2f5tX 233 80.66 1yb0A 159 81.43 d.118.1.1 122865 1rypD 241 83.02 d.153.1.4 41935 2nrrA 159 84.23 1y8qA 346 84.53 2g4rA 160 84.64 1gakA 141 85.35 a.19.1.1 16415 3db2A 354 86.80 2bgxA 261 87.34 a.20.1.1,d.118.1.1 128504,128505 1vicA 262 87.60 c.68.1.13 100756 1iv8A 720 89.22 b.71.1.1,c.1.8.1 76842,76843 1a4iA 301 89.35 c.2.1.7,c.58.1.2 30278,33926 2j69A 695 89.72