# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 6.36e-39 c.55.3.10 120785 1u04A 771 4.66e-36 b.34.14.1,c.55.3.10 107539,107540 2hqbA 296 1.665 1jx6A 342 1.952 c.93.1.1 67406 2qh9A 184 2.281 1m1nA 491 6.064 c.92.2.3 78417 2gwnA 452 6.831 1tjyA 316 9.425 c.93.1.1 107062 2fqxA 318 10.01 1z15A 344 10.90 1zc6A 305 11.15 c.55.1.5,c.55.1.5 124888,124889 1usgA 346 11.23 c.93.1.1 99864 1h3gA 601 13.28 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2az4A 429 14.05 d.157.1.10 127597 3d02A 303 14.24 1ewkA 490 16.05 c.93.1.1 35712 3cb6A 444 16.37 3d0cA 314 16.54 1fuiA 591 17.33 b.43.2.1,c.85.1.1 25674,35444 1gvnB 287 18.44 c.37.1.21 76354 1xpkC 388 20.05 c.95.1.2,c.95.1.2 115747,115748 1pea 385 20.38 1l6rA 227 21.05 c.108.1.10 77768 1dbqA 289 21.40 c.93.1.1 35666 1gnxA 479 23.64 c.1.8.4 76241 1qh8A 478 25.43 c.92.2.3 35633 1qh8B 519 26.74 c.92.2.3 35634 2qi2A 347 27.21 1exbA 332 27.22 c.1.7.1 28666 1w23A 360 28.58 c.67.1.4 114088 1xzoA 174 29.21 c.47.1.10 122474 1u4nA 310 30.13 c.69.1.2 113021 1gveA 327 30.64 c.1.7.1 70597 2d1zA 436 31.35 1gudA 288 31.59 c.93.1.1 83326 1oywA 523 31.66 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1thg 544 32.70 1a0iA 348 32.78 b.40.4.6,d.142.2.1 25363,41577 2rjoA 332 33.65 8abp 306 33.97 2p3rA 510 34.40 c.55.1.4,c.55.1.4 139471,139472 2o20A 332 35.44 2qvcA 313 36.48 2e9lA 469 37.09 1fnnA 389 37.47 a.4.5.11,c.37.1.20 16129,32426 2fvyA 309 38.25 c.93.1.1 134227 8abpA 306 38.80 c.93.1.1 35647 2z61A 370 39.02 1xmxA 385 39.17 c.52.1.26 115568 2qu8A 228 41.37 3b5eA 223 42.55 1lstA 239 43.14 c.94.1.1 35755 2purA 292 43.17 1zsxA 347 43.60 3cq5A 369 45.16 2g3mA 693 45.49 1tfr 305 46.42 1iv8A 720 46.75 b.71.1.1,c.1.8.1 76842,76843 1khvA 516 46.89 e.8.1.4 68627 2r98A 456 47.57 1vqzA 341 47.79 d.224.1.3,d.104.1.3 120426,120427 1y7mA 164 48.77 b.160.1.1,d.7.1.1 122696,122697 2qu7A 288 48.85 1wcgA 464 49.15 c.1.8.4 120888 1gca 309 49.63 3ceaA 346 49.64 1lqaA 346 50.25 c.1.7.1 84674 1m1nB 522 50.91 c.92.2.3 78418 2cygA 312 51.29 c.1.8.3 131025 1npyA 271 51.68 c.2.1.7,c.58.1.5 85995,85996 1y56B 382 52.58 1ra6A 461 52.91 e.8.1.4 104879 1khcA 147 53.56 b.34.9.2 68608 1rj9A 304 54.52 a.24.13.1,c.37.1.10 97553,97554 2hm7A 310 55.09 1mzjA 339 55.91 c.95.1.2,c.95.1.2 79700,79701 2j04A 588 56.39 2h3hA 313 56.57 2qv7A 337 57.00 1v73A 342 57.89 2q4zA 312 59.53 2q8uA 336 62.36 2q62A 247 63.62 1in4A 334 64.77 a.4.5.11,c.37.1.20 62597,62598 2e4uA 555 65.94 1vicA 262 67.37 c.68.1.13 100756 1lwjA 441 68.48 b.71.1.1,c.1.8.1 74303,74304 1zkpA 268 68.67 d.157.1.9 125205 1q1aA 289 68.95 c.31.1.5 95561 2dri 271 68.97 2ioyA 283 69.39 2nrrA 159 70.34 1jyeA 349 71.26 c.93.1.1 67455 1yc5A 246 72.16 c.31.1.5 122910 1rydA 387 73.13 c.2.1.3,d.81.1.5 118801,118802 1wzaA 488 73.54 b.71.1.1,c.1.8.1 121489,121490 2dskA 311 73.62 2r91A 286 74.12 2ghpA 292 74.15 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1yslA 402 75.39 2rgmA 481 77.22 1wstA 417 78.08 c.67.1.1 121244 2driA 271 78.26 c.93.1.1 35637 1f74A 293 78.40 c.1.10.1 29079 1wvqA 167 79.29 2hf2A 283 79.32 2rebA 352 79.47 c.37.1.11,d.48.1.1 32282,38767 1ua7A 422 79.57 b.71.1.1,c.1.8.1 107759,107760 1mkzA 172 79.58 c.57.1.1 84998 1bykA 255 80.12 c.93.1.1 35706 1r59O 505 80.45 c.55.1.4,c.55.1.4 111697,111698 1tezA 474 82.39 a.99.1.1,c.28.1.1 112409,112410 3c61A 314 82.43 2vc6A 292 82.48 1tedA 393 84.55 c.95.1.2 106807 2pl5A 366 85.18 1o2dA 371 85.30 e.22.1.2 86591 1xkyA 301 86.50 c.1.10.1 122094 1ug0A 88 88.95 a.217.1.1 107822 2f5tX 233 89.38 1gz0A 253 89.89 c.116.1.1,d.79.3.3 76391,76392