# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.53e-27 c.55.3.10 120785 1u04A 771 1.80e-25 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 0.9540 c.93.1.1 67406 8abp 306 2.401 1gudA 288 3.044 c.93.1.1 83326 1m1nA 491 3.515 c.92.2.3 78417 1xmxA 385 4.236 c.52.1.26 115568 2fqxA 318 4.633 1m1nB 522 4.970 c.92.2.3 78418 2rjoA 332 5.757 2i4iA 417 5.997 2e9lA 469 6.256 2hqbA 296 6.494 1dbqA 289 7.974 c.93.1.1 35666 1xdpA 687 8.829 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 2ioyA 283 8.979 1qh8B 519 9.757 c.92.2.3 35634 1u0mA 382 10.57 c.95.1.2,c.95.1.2 107557,107558 8abpA 306 13.12 c.93.1.1 35647 1thg 544 14.45 2o9pA 454 17.86 1tvzA 388 19.36 c.95.1.2,c.95.1.2 107367,107368 3c6qA 311 20.62 1yslA 402 21.47 1yp2A 451 21.48 b.81.1.4,c.68.1.6 123798,123799 1qh8A 478 21.66 c.92.2.3 35633 2iksA 293 22.18 2fn9A 290 22.36 2qh8A 302 22.78 1gnxA 479 22.81 c.1.8.4 76241 2c4wA 176 23.07 1pea 385 23.22 3d02A 303 23.70 1thgA 544 24.21 c.69.1.17 34763 2r91A 286 24.22 2driA 271 29.43 c.93.1.1 35637 2q8uA 336 29.59 2qy9A 309 30.11 2j78A 468 32.57 c.1.8.4 138099 1qopA 268 33.40 c.1.2.4 28570 1jyeA 349 33.67 c.93.1.1 67455 2o0tA 467 33.95 1oywA 523 34.38 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2rgmA 481 34.40 2citA 282 35.74 c.1.8.3 130499 2q4zA 312 37.91 2ebnA 289 38.53 c.1.8.5 28990 1gca 309 38.79 1ht6A 405 39.88 b.71.1.1,c.1.8.1 83629,83630 3ce9A 354 40.11 1lt8A 406 41.79 c.1.26.1 78186 2ebn 289 41.96 1gtzA 156 43.08 c.23.13.1 70539 2qh9A 184 43.45 1v02A 565 43.62 c.1.8.4 108194 2al1A 436 43.71 c.1.11.1,d.54.1.1 126949,126950 1hnjA 317 43.87 c.95.1.2,c.95.1.2 35969,35970 1tedA 393 44.41 c.95.1.2 106807 2dri 271 45.17 1f74A 293 47.19 c.1.10.1 29079 2qu7A 288 47.84 2jbwA 386 48.14 1io2A 213 48.37 c.55.3.1 62612 2p8uA 478 48.41 1tjyA 316 50.86 c.93.1.1 107062 2o20A 332 51.68 2fvyA 309 51.96 c.93.1.1 134227 1bykA 255 51.96 c.93.1.1 35706 2guyA 478 52.67 b.71.1.1,c.1.8.1 135754,135755 1xkyA 301 54.37 c.1.10.1 122094 1o5kA 306 54.97 c.1.10.1 92504 3bmvA 683 55.32 2fepA 289 56.56 3cc1A 433 57.38 2z26A 347 57.66 2aaaA 484 58.51 b.71.1.1,c.1.8.1 27777,28764 2og2A 359 58.66 1q1aA 289 59.33 c.31.1.5 95561 2ywiA 196 59.46 3c61A 314 59.69 1pyfA 312 59.92 c.1.7.1 95334 1oc7A 364 61.26 c.6.1.1 86794 1tfr 305 63.73 2q62A 247 63.78 1musA 477 65.26 c.55.3.4 79494 2g4rA 160 65.61 1wcgA 464 66.12 c.1.8.4 120888 1u6eA 335 68.33 c.95.1.2,c.95.1.2 119568,119569 1uteA 313 68.49 d.159.1.1 42078 1gveA 327 68.77 c.1.7.1 70597 2vojA 371 70.47 1pbgA 468 71.12 c.1.8.4 28946 3b9qA 302 71.64 2qvcA 313 71.67 1ta3A 274 72.13 c.1.8.5 106731 3bczA 293 72.29 1x1oA 286 72.32 2pn1A 331 72.59 1j8fA 323 73.51 c.31.1.5 62738 1l6rA 227 79.16 c.108.1.10 77768 2f82A 450 80.67 3be7A 408 81.34 1uwsA 489 81.43 c.1.8.4 108073 1rj9A 304 82.27 a.24.13.1,c.37.1.10 97553,97554 1jqlB 140 82.56 c.37.1.20 63234 7taa 478 83.12 1dqsA 393 87.21 e.22.1.1 43347 1uqrA 154 88.22 c.23.13.1 99779 1yixA 265 88.49 c.1.9.12 123371 2pw6A 271 89.06