# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 3.09e-18 c.55.3.10 120785 1u04A 771 3.44e-16 b.34.14.1,c.55.3.10 107539,107540 3ce9A 354 3.221 1hnjA 317 3.278 c.95.1.2,c.95.1.2 35969,35970 2qv7A 337 5.398 2ebdA 309 5.598 2c4wA 176 6.449 1gudA 288 8.009 c.93.1.1 83326 1stzA 338 8.842 a.4.5.51,d.110.2.3 106009,106010 1f0xA 571 9.794 d.58.32.2,d.145.1.1 39483,41746 1ehiA 377 11.03 c.30.1.2,d.142.1.1 31716,41484 2vupA 190 11.81 1vljA 407 11.98 e.22.1.2 108832 1mzjA 339 12.02 c.95.1.2,c.95.1.2 79700,79701 2fqxA 318 13.69 1m1nA 491 13.91 c.92.2.3 78417 1gtzA 156 14.61 c.23.13.1 70539 2aa4A 289 15.48 c.55.1.10,c.55.1.10 126465,126466 1kjqA 391 15.77 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1yexA 186 16.51 c.47.1.10 123021 2ywiA 196 16.73 2glxA 332 16.80 2bryA 497 17.10 1fmtA 314 17.45 b.46.1.1,c.65.1.1 25758,34174 1qh8A 478 17.60 c.92.2.3 35633 2qvcA 313 18.85 2bmxA 195 19.65 c.47.1.10 128817 1ixcA 294 22.00 a.4.5.37,c.94.1.1 83764,83765 2fv7A 331 22.19 c.72.1.1 134197 2fb9A 322 22.77 1o2dA 371 22.78 e.22.1.2 86591 2yzhA 171 23.59 1u6eA 335 23.80 c.95.1.2,c.95.1.2 119568,119569 2gl5A 410 23.92 c.1.11.2,d.54.1.1 135336,135337 1h05A 146 24.05 c.23.13.1 76433 1uqrA 154 24.35 c.23.13.1 99779 1xvqA 175 24.48 c.47.1.10 116094 2ywnA 157 27.10 1xpmA 396 27.68 c.95.1.2,c.95.1.2 115759,115760 1xdpA 687 27.97 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 1dv2A 452 28.07 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2hyxA 352 28.64 2e3zA 465 29.96 1jq5A 370 30.52 e.22.1.2 67084 2v6oA 596 30.76 1jx6A 342 30.81 c.93.1.1 67406 1tqyA 424 31.27 c.95.1.1,c.95.1.1 107245,107246 1zowA 313 34.43 1gnxA 479 35.00 c.1.8.4 76241 2i87A 364 35.32 1we0A 187 36.00 c.47.1.10 120930 1tvzA 388 36.21 c.95.1.2,c.95.1.2 107367,107368 1fuiA 591 36.67 b.43.2.1,c.85.1.1 25674,35444 1rj9A 304 36.80 a.24.13.1,c.37.1.10 97553,97554 1ug6A 431 36.94 c.1.8.4 88490 1b6rA 355 37.21 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1ryiA 382 37.73 c.3.1.2,d.16.1.3 118813,118814 2ffiA 288 37.83 c.1.9.15 133385 2an1A 292 38.31 2zdhA 319 38.69 2qh8A 302 38.98 2d3yA 219 39.82 2og2A 359 40.62 2dwcA 433 41.17 1n8jA 186 41.77 c.47.1.10 85401 1wohA 305 42.40 c.42.1.1 109446 1iowA 306 43.19 c.30.1.2,d.142.1.1 31713,41481 1rkd 309 44.10 2gagB 405 44.77 2d51A 406 46.31 1xmxA 385 46.39 c.52.1.26 115568 8abp 306 47.18 1pswA 348 47.34 c.87.1.7 88287 1dv1A 449 47.98 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3b9qA 302 48.02 1f0kA 364 49.19 c.87.1.2 35465 2qh9A 184 49.59 1rkdA 309 50.24 c.72.1.1 34928 2b18A 164 50.41 1g2oA 268 51.20 c.56.2.1 60228 1i7qB 193 51.63 c.23.16.1 61902 1zczA 464 51.77 c.24.1.3,c.97.1.4 124923,124924 2p2sA 336 52.47 1woqA 267 52.70 c.55.1.10,c.55.1.10 109462,109463 2ivnA 330 53.00 1ii7A 333 53.03 d.159.1.4 62415 2ix4A 431 53.03 c.95.1.1,c.95.1.1 137759,137760 1yslA 402 53.29 1rg9A 383 53.64 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 2obiA 183 55.78 1xvwA 160 56.23 c.47.1.10 122387 1xpkC 388 57.32 c.95.1.2,c.95.1.2 115747,115748 2yrxA 451 57.92 2bonA 332 58.36 2abqA 306 58.67 c.72.1.1 126528 1e4eA 343 58.72 c.30.1.2,d.142.1.1 59221,59222 2h3hA 313 58.94 3cgvA 397 59.28 3dhpA 496 59.85 1uc8A 280 59.85 c.30.1.6,d.142.1.7 99165,99166 1iow 306 60.03 1w96A 554 60.48 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1rrmA 386 61.66 e.22.1.2 105081 2a4vA 159 62.82 c.47.1.10 126163 2rhsA 294 63.69 2b9wA 424 63.70 2ox4A 403 63.91 2gupA 292 64.27 c.55.1.10,c.55.1.10 135744,135745 2e9lA 469 66.21 2z5lA 511 66.30 1ygyA 529 66.50 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2c9hA 444 67.99 2fr1A 486 68.65 c.2.1.2,c.2.1.2 133961,133962 1vpvA 300 69.07 c.119.1.1 113975 3d02A 303 69.51 2fvyA 309 70.97 c.93.1.1 134227 1kq3A 376 71.41 e.22.1.2 68790 2p02A 396 71.94 1pbgA 468 72.09 c.1.8.4 28946 1tzzA 392 72.39 c.1.11.2,d.54.1.1 112896,112897 1e4iA 447 72.54 c.1.8.4 59225 3c6qA 311 73.71 2yxtA 312 74.71 2rgmA 481 74.79 1kbjA 412 74.85 c.1.4.1 72280 3bmvA 683 74.88 2dfaA 250 75.77 c.6.2.5 131469 1q98A 165 76.44 c.47.1.10 96253 2jf7A 532 77.06 1smd 496 77.39 2o20A 332 77.47 1lwjA 441 78.00 b.71.1.1,c.1.8.1 74303,74304 8abpA 306 78.69 c.93.1.1 35647 2vbaA 406 78.86 1ituA 369 79.12 c.1.9.7 71423 1rkqA 282 81.61 c.108.1.10 97621 1oe4A 247 82.20 c.18.1.3 86895 1a76 326 82.49 2f02A 323 82.64 c.72.1.1 132649 1ta9A 450 83.07 1an9A 340 83.10 c.4.1.2,d.16.1.3 30617,37904 2f7lA 455 83.36 1u0mA 382 83.83 c.95.1.2,c.95.1.2 107557,107558 1mx3A 347 83.85 c.2.1.4,c.23.12.1 79638,79639 2h3gX 268 84.67 2bywA 418 84.79 c.95.1.1,c.95.1.1 129498,129499 3brqA 296 85.84 2nxfA 322 87.87 1i39A 225 88.35 c.55.3.1 61585 1l9cA 389 88.64 c.3.1.2,d.16.1.3 77815,77816 2driA 271 89.99 c.93.1.1 35637