Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	8.3611e-47	1u04A/T0487-1u04A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1w9hA	6.6732e-41	1w9hA/T0487-1w9hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.10
1gudA	6.9346e-01	1gudA/T0487-1gudA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1jx6A	7.2031e-01	1jx6A/T0487-1jx6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
2qh9A	1.4104e+00	2qh9A/T0487-2qh9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
8abp	3.2294e+00	8abp/T0487-8abp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dxnA	3.9331e+00	2dxnA/T0487-2dxnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dri	4.1052e+00	2dri/T0487-2dri-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tjyA	4.8579e+00	1tjyA/T0487-1tjyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1mkzA	5.8506e+00	1mkzA/T0487-1mkzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.57.1.1
2yvtA	6.6249e+00	2yvtA/T0487-2yvtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fqxA	7.4379e+00	2fqxA/T0487-2fqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2nxfA	1.0188e+01	2nxfA/T0487-2nxfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1usgA	1.0305e+01	1usgA/T0487-1usgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
2liv	1.3261e+01	2liv/T0487-2liv-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hy1A	1.4037e+01	2hy1A/T0487-2hy1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gca	1.4256e+01	1gca/T0487-1gca-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dbqA	1.4380e+01	1dbqA/T0487-1dbqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.93.1.1
1z15A	1.5657e+01	1z15A/T0487-1z15A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hqbA	1.6317e+01	2hqbA/T0487-2hqbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001