# List of top-scoring protein chains for T0487.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yvuA 706 3.93e-23 b.34.14.1,c.55.3.10 124120,124121 1w9hA 427 1.50e-21 c.55.3.10 120785 1u04A 771 2.05e-17 b.34.14.1,c.55.3.10 107539,107540 1infA 390 2.795 b.68.1.1 27602 2o0bA 450 2.835 2bjbA 462 2.877 1xr7A 460 2.881 e.8.1.4 115866 1tp7A 460 3.557 2vl1A 474 3.765 1r3nA 462 4.167 c.56.5.4,d.58.19.1 96945,96946 1r43A 463 4.266 c.56.5.4,d.58.19.1 96969,96970 2v8hA 474 4.717 2v8vA 474 4.931 1tqyB 415 6.749 c.95.1.1,c.95.1.1 107247,107248 2b7aA 293 7.004 1vcjA 389 8.764 b.68.1.1 100559 1b9vA 390 8.784 b.68.1.1 27603 1z82A 335 11.68 1j8mF 297 13.05 a.24.13.1,c.37.1.10 62742,62743 1j8yF 297 14.71 a.24.13.1,c.37.1.10 62747,62748 2r6jA 318 14.94 2r2gA 318 15.11 1vs5B 241 15.46 2qalB 240 15.83 1m32A 366 16.20 c.67.1.3 78508 2qw8A 314 16.27 2hmaA 376 16.57 1cfrA 285 17.00 c.52.1.7 33312 2gy9B 236 17.07 1uqrA 154 18.36 c.23.13.1 99779 1rcuA 195 19.02 c.129.1.1 97295 2v7bA 529 19.60 2todA 425 20.14 b.49.2.3,c.1.6.1 26489,28651 2h3hA 313 20.20 1fa2A 498 21.12 c.1.8.1 28797 2qvcA 313 21.66 3c3xA 318 21.77 1jfuA 186 22.56 c.47.1.10 62940 1v04A 355 24.29 b.68.6.2 100240 1xyzA 347 25.01 c.1.8.3 28804 1jaeA 471 25.02 b.71.1.1,c.1.8.1 27773,28760 2rliA 171 25.43 1viwA 471 26.19 b.71.1.1,c.1.8.1 27776,28763 2dr1A 386 29.51 1nscA 390 33.51 b.68.1.1 27591 1h1yA 228 33.64 c.1.2.2 76506 1vhdA 371 33.96 e.22.1.2 100667 1njjA 425 34.36 b.49.2.3,c.1.6.1 91905,91906 1f3tA 425 34.53 b.49.2.3,c.1.6.1 26493,28655 2bpoA 682 36.09 2v7kA 361 36.55 2ekcA 262 36.61 1szrA 425 38.31 b.49.2.3,c.1.6.1 112174,112175 2kfnA 605 38.92 c.55.3.5,e.8.1.1 33682,42975 1xkhA 687 39.72 1dpiA 605 40.05 c.55.3.5,e.8.1.1 33692,42985 3c6qA 311 40.89 1wdiA 345 41.09 e.53.1.1 114535 2nxvA 249 41.27 2qgiA 248 41.32 1qhtA 775 41.58 c.55.3.5,e.8.1.1 33722,43011 3cklA 298 42.94 3ct9A 356 43.03 2qrlA 394 43.11 2q99A 381 43.60 2p7nA 407 43.93 1o2dA 371 45.14 e.22.1.2 86591 2z5fA 298 45.18 1d8yA 605 45.76 c.55.3.5,e.8.1.1 33684,42977 2gmwA 211 46.76 1tgoA 773 50.65 c.55.3.5,e.8.1.1 33721,43010 1klnA 605 52.21 c.55.3.5,e.8.1.1 33693,42986 1mzjA 339 55.92 c.95.1.2,c.95.1.2 79700,79701 2bn4A 682 56.22 1zj8A 566 59.98 1ho1A 242 60.34 c.1.24.1 61097 1m5wA 243 60.87 c.1.24.1 84836 1ukpA 495 60.92 c.1.8.1 99505 2bckA 294 64.38 b.1.1.2,d.19.1.1 128293,128294 2eivA 291 65.26 2ef5A 290 65.94 2jf2A 264 66.91 b.81.1.1 138289 1ap8A 213 67.69 d.86.1.1 40151 1ukoA 495 69.63 c.1.8.1 99501 2qiaA 262 69.99 1xr6A 460 71.00 e.8.1.4 115865 1zedA 484 72.08 c.76.1.1 124980 1mdbA 539 73.19 e.23.1.1 79008 1nt2B 258 74.94 a.183.1.1 86150 1q6gA 495 76.21 c.1.8.1 95974 1ew2A 513 78.41 c.76.1.1 59525 1hqaA 449 79.46 c.76.1.1 34998 2d74B 148 80.47 3ch3X 265 80.64 2dhrA 499 80.91 1u3eM 174 81.55 d.4.1.3,d.285.1.1 107640,107641 2fvoA 333 81.65 e.38.1.1 134220 2bnxA 386 81.69 a.118.1.23 128861 2bapA 317 81.97 a.118.1.23 128242 1fiuA 286 83.41 c.52.1.10 33317 1x1pA 212 84.09 c.55.3.1 121594 1rq0A 342 84.44 e.38.1.1 105044 1aliA 449 88.82 c.76.1.1 34996 1vljA 407 89.31 e.22.1.2 108832