# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 8.06e-44 c.55.3.10 120785 1u04A 771 2.85e-43 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 0.6500 c.93.1.1 67406 1mkzA 172 1.705 c.57.1.1 84998 2qh9A 184 2.348 2yvtA 260 2.638 1gudA 288 3.443 c.93.1.1 83326 2nxfA 322 6.355 1f0iA 504 6.979 d.136.1.2,d.136.1.2 59566,59567 1iuqA 367 7.420 c.112.1.1 90703 2dxnA 274 11.49 2gqwA 408 11.66 1dbqA 289 12.40 c.93.1.1 35666 2g2cA 167 13.43 c.57.1.1 134535 2dri 271 14.31 2hy1A 280 14.68 1k30A 368 14.90 c.112.1.1 68067 1zc6A 305 15.14 c.55.1.5,c.55.1.5 124888,124889 1usgA 346 15.72 c.93.1.1 99864 2g7zA 282 16.19 1vpvA 300 16.19 c.119.1.1 113975 1st9A 143 16.47 c.47.1.10 98987 2fepA 289 16.97 1cfr 285 17.22 1lqaA 346 17.51 c.1.7.1 84674 1tjyA 316 17.73 c.93.1.1 107062 2pjkA 178 17.74 2fqxA 318 18.45 2f5tX 233 19.29 1zsxA 347 21.34 1o2dA 371 21.78 e.22.1.2 86591 1z15A 344 22.91 2v3gA 283 22.95 1i5gA 144 23.88 c.47.1.10 61784 1v0wA 506 26.06 d.136.1.2,d.136.1.2 108220,108221 1r85A 379 27.55 c.1.8.3 104839 1j0hA 588 27.76 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2pgfA 371 29.46 1xzoA 174 30.04 c.47.1.10 122474 1w32A 348 30.28 c.1.8.3 114120 1bu6O 501 31.35 c.55.1.4,c.55.1.4 33499,33500 1bykA 255 32.28 c.93.1.1 35706 1zxxA 319 32.40 2j01Q 141 33.18 8abp 306 34.21 2tysA 268 35.16 c.1.2.4 28572 1qw9A 502 36.13 b.71.1.2,c.1.8.3 96466,96467 1vheA 373 37.37 b.49.3.1,c.56.5.4 100669,100670 1mdbA 539 37.58 e.23.1.1 79008 2hqbA 296 38.58 2aaaA 484 39.21 b.71.1.1,c.1.8.1 27777,28764 2nyiA 195 39.97 3cpxA 321 40.66 1vpt 348 41.15 1yloA 348 42.14 b.49.3.1,c.56.5.4 123659,123660 2f48A 555 42.33 c.89.1.1 132915 2e1vA 454 43.21 2q8uA 336 44.49 3brqA 296 45.01 1exbA 332 46.02 c.1.7.1 28666 1gz0A 253 48.87 c.116.1.1,d.79.3.3 76391,76392 1tl9A 339 49.74 d.3.1.3 112505 1hdoA 206 50.59 c.2.1.2 60965 2dskA 311 51.72 1f75A 249 53.83 c.101.1.1 59662 1t9kA 347 54.74 c.124.1.5 106721 2hq9A 149 57.36 b.45.1.1 136659 1m7xA 617 57.47 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1gveA 327 58.15 c.1.7.1 70597 1hqkA 154 59.23 c.16.1.1 65902 2p3rA 510 59.49 c.55.1.4,c.55.1.4 139471,139472 1jdpA 441 60.23 c.93.1.1 62906 1tlfA 301 60.51 c.93.1.1 35687 2liv 344 60.55 2cxyA 125 60.79 1vi9A 299 61.03 c.72.1.5 100750 2is8A 164 61.44 1wxiA 275 61.58 c.26.2.1 121400 1pfkA 320 61.88 c.89.1.1 35575 2ho3A 325 63.28 2hejA 323 65.82 1o8xA 146 65.87 c.47.1.10 86681 2higA 487 69.39 2fvgA 340 71.06 b.49.3.1,c.56.5.4 134201,134202 2csuA 457 71.31 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2h30A 164 72.59 1gt6A 269 73.25 c.69.1.17 76342 1uf3A 228 74.11 d.159.1.6 99317 2zf5O 497 74.18 1ra6A 461 74.32 e.8.1.4 104879 2o2yA 349 74.84 c.2.1.2 138894 1xgkA 352 75.44 c.2.1.2 115286 1j3gA 187 76.85 d.118.1.1 77075 2uytA 489 77.02 2ar9A 278 77.59 1fuiA 591 78.50 b.43.2.1,c.85.1.1 25674,35444 1dp4A 435 78.63 c.93.1.1 35710 1zyeA 220 80.26 c.47.1.10 125817 1jftA 340 82.14 a.35.1.5,c.93.1.1 66652,66653 1jubA 311 82.86 c.1.4.1 90908 2c4wA 176 83.28 2glfA 450 83.46 1pz1A 333 87.29 c.1.7.1 95390 3tglA 269 88.07 c.69.1.17 34733 1qopB 396 88.55 c.79.1.1 35270 1ihcA 188 89.86 c.57.1.1 62379 1q77A 138 90.00 c.26.2.4 96023