# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 1.04e-42 b.34.14.1,c.55.3.10 107539,107540 1w9hA 427 1.86e-42 c.55.3.10 120785 1gudA 288 0.6614 c.93.1.1 83326 1jx6A 342 1.322 c.93.1.1 67406 2qh9A 184 1.477 2dxnA 274 4.566 1mkzA 172 4.868 c.57.1.1 84998 2yvtA 260 5.333 1usgA 346 6.129 c.93.1.1 99864 1cfr 285 6.471 2nxfA 322 7.226 1zsxA 347 7.293 1r85A 379 8.142 c.1.8.3 104839 1z15A 344 9.743 1iuqA 367 9.919 c.112.1.1 90703 8abp 306 10.42 1f0iA 504 11.80 d.136.1.2,d.136.1.2 59566,59567 1k30A 368 13.10 c.112.1.1 68067 2dri 271 13.46 1gt6A 269 13.60 c.69.1.17 76342 1zc6A 305 15.39 c.55.1.5,c.55.1.5 124888,124889 2fvgA 340 17.62 b.49.3.1,c.56.5.4 134201,134202 2liv 344 17.88 1tjyA 316 18.26 c.93.1.1 107062 2hy1A 280 18.63 2tysA 268 19.12 c.1.2.4 28572 1w32A 348 19.70 c.1.8.3 114120 2pgfA 371 20.65 2fepA 289 20.80 1q77A 138 21.96 c.26.2.4 96023 1vgwA 231 22.05 c.68.1.13 100612 1xgkA 352 22.37 c.2.1.2 115286 2gqwA 408 24.62 2fqxA 318 25.51 1lqaA 346 26.92 c.1.7.1 84674 1vheA 373 28.50 b.49.3.1,c.56.5.4 100669,100670 1exbA 332 31.81 c.1.7.1 28666 2f48A 555 32.08 c.89.1.1 132915 1j0hA 588 32.46 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2db3A 434 32.56 1yloA 348 32.72 b.49.3.1,c.56.5.4 123659,123660 2pjkA 178 34.51 1bu6O 501 35.25 c.55.1.4,c.55.1.4 33499,33500 2a0uA 383 35.66 1frb 315 36.18 1vpt 348 36.70 2bijA 305 36.76 2ar9A 278 37.88 2q8uA 336 38.06 1v0lA 313 38.49 c.1.8.3 108207 3cpxA 321 38.74 2r8wA 332 40.39 1fh9A 312 40.45 c.1.8.3 28913 1i1wA 303 40.90 c.1.8.3 76732 2q62A 247 41.26 8abpA 306 41.44 c.93.1.1 35647 2hejA 323 43.90 2j01Q 141 45.24 2hqbA 296 45.61 1dbqA 289 46.03 c.93.1.1 35666 2p3rA 510 46.32 c.55.1.4,c.55.1.4 139471,139472 2ho3A 325 46.81 1v0wA 506 47.05 d.136.1.2,d.136.1.2 108220,108221 1wxiA 275 47.98 c.26.2.1 121400 2vfxA 206 48.23 1jubA 311 48.77 c.1.4.1 90908 1t9kA 347 49.80 c.124.1.5 106721 2o0bA 450 52.59 1ekeA 230 52.67 c.55.3.1 33572 1zxxA 319 53.41 2f5tX 233 53.73 1khcA 147 55.36 b.34.9.2 68608 1vi9A 299 56.28 c.72.1.5 100750 1i5gA 144 58.10 c.47.1.10 61784 2dskA 311 58.14 1gz0A 253 58.60 c.116.1.1,d.79.3.3 76391,76392 2nyiA 195 58.78 1mdbA 539 59.99 e.23.1.1 79008 3brqA 296 61.71 1xzoA 174 62.81 c.47.1.10 122474 1clxA 347 63.07 c.1.8.3 28899 2d0bA 310 63.49 2higA 487 63.63 1ecpA 238 64.31 c.56.2.1 33775 1wa3A 205 65.94 c.1.10.1 120802 1vpvA 300 65.94 c.119.1.1 113975 1tlfA 301 66.15 c.93.1.1 35687 1qw9A 502 66.29 b.71.1.2,c.1.8.3 96466,96467 1ta3B 303 68.89 c.1.8.3 106732 2v5xA 388 69.63 2cxyA 125 69.95 2rjoA 332 69.96 2hq9A 149 70.29 b.45.1.1 136659 1qh8A 478 70.47 c.92.2.3 35633 1ezwA 349 73.25 c.1.16.3 29558 1vh7A 265 73.26 c.1.2.1 100646 1aj2 282 75.42 2glfA 450 76.12 2qulA 290 77.19 1jftA 340 77.66 a.35.1.5,c.93.1.1 66652,66653 2fg1A 158 77.81 c.50.1.2 133400 2csuA 457 78.21 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1uf3A 228 78.51 d.159.1.6 99317 2zf5O 497 78.62 1rzuA 485 78.72 c.87.1.8 105140 3d0kA 304 79.37 1st9A 143 80.39 c.47.1.10 98987 1gvhA 396 81.61 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2depA 356 82.54 1n82A 331 83.01 c.1.8.3 91703 2afbA 351 83.27 c.72.1.1 126674 2i0fA 157 83.96 2aaaA 484 84.56 b.71.1.1,c.1.8.1 27777,28764 2gpjA 252 84.97 2bfgA 503 86.76 b.71.1.2,c.1.8.3 128423,128424 2a0nA 265 87.11 c.1.2.1 125961 2rgyA 290 87.89 1ujpA 271 88.44 c.1.2.4 99462 1w30A 201 89.09 c.61.1.1 114118 1vhoA 346 89.10 b.49.3.1,c.56.5.4 100694,100695