# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 3.62e-45 c.55.3.10 120785 1u04A 771 7.95e-45 b.34.14.1,c.55.3.10 107539,107540 1gudA 288 0.7708 c.93.1.1 83326 1jx6A 342 1.959 c.93.1.1 67406 2yvtA 260 2.358 2gqwA 408 5.183 2fqxA 318 5.310 2qh9A 184 5.991 1cfr 285 7.319 1mkzA 172 7.394 c.57.1.1 84998 2dxnA 274 7.662 1f0iA 504 8.124 d.136.1.2,d.136.1.2 59566,59567 2j01Q 141 10.53 1k30A 368 11.09 c.112.1.1 68067 2pgfA 371 11.31 2tysA 268 12.18 c.1.2.4 28572 1jaeA 471 13.17 b.71.1.1,c.1.8.1 27773,28760 1t9kA 347 13.56 c.124.1.5 106721 1zsxA 347 14.79 2hy1A 280 16.72 1xw2A 405 16.80 a.102.1.2 122389 1iuqA 367 17.58 c.112.1.1 90703 1ra6A 461 19.50 e.8.1.4 104879 1bu6O 501 21.09 c.55.1.4,c.55.1.4 33499,33500 1zxxA 319 21.48 1jdpA 441 21.58 c.93.1.1 62906 1gakA 141 21.81 a.19.1.1 16415 2hqbA 296 22.11 2a7mA 250 23.28 1jubA 311 23.37 c.1.4.1 90908 1qh8A 478 24.06 c.92.2.3 35633 2nxfA 322 25.82 1kqfB 294 26.09 d.58.1.5,f.23.22.1 75900,75901 1r85A 379 26.71 c.1.8.3 104839 1zc6A 305 28.40 c.55.1.5,c.55.1.5 124888,124889 1i5gA 144 31.55 c.47.1.10 61784 1tjyA 316 33.31 c.93.1.1 107062 2r8wA 332 34.62 1wxiA 275 34.67 c.26.2.1 121400 1y44A 320 35.64 d.157.1.7 122608 2bfgA 503 36.52 b.71.1.2,c.1.8.3 128423,128424 2hq9A 149 38.82 b.45.1.1 136659 2f5tX 233 41.24 1xngA 268 41.64 c.26.2.1 122186 2bwjA 199 42.06 2pfkA 320 42.37 c.89.1.1 35577 2p3rA 510 42.40 c.55.1.4,c.55.1.4 139471,139472 1w3iA 293 42.46 c.1.10.1 109152 1h12A 405 43.36 a.102.1.2 83447 1vpt 348 44.33 8abp 306 44.92 2f48A 555 45.88 c.89.1.1 132915 1v0wA 506 47.74 d.136.1.2,d.136.1.2 108220,108221 1o2dA 371 47.74 e.22.1.2 86591 2aaaA 484 49.31 b.71.1.1,c.1.8.1 27777,28764 1m1nB 522 49.39 c.92.2.3 78418 2v3gA 283 50.82 1exbA 332 50.89 c.1.7.1 28666 2gwhA 298 50.93 1dp4A 435 53.53 c.93.1.1 35710 1gcyA 527 53.70 b.71.1.1,c.1.8.1 27788,28775 2dskA 311 54.90 2purA 292 55.04 2g7zA 282 56.23 1j0hA 588 56.24 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1gveA 327 56.41 c.1.7.1 70597 1uozA 315 57.24 c.6.1.1 113354 1ujpA 271 57.27 c.1.2.4 99462 1oc7A 364 58.23 c.6.1.1 86794 1m7xA 617 59.28 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1i2cA 404 60.46 c.2.1.2 83666 1yloA 348 61.29 b.49.3.1,c.56.5.4 123659,123660 1pfkA 320 61.70 c.89.1.1 35575 2q8uA 336 61.84 2qwxA 231 62.70 2pt0A 340 64.02 2uytA 489 64.99 1khcA 147 65.74 b.34.9.2 68608 2dri 271 66.96 2rfgA 297 69.87 1dbqA 289 70.01 c.93.1.1 35666 1dorA 311 70.69 c.1.4.1 28595 1z15A 344 70.93 1uf3A 228 71.23 d.159.1.6 99317 1n93X 375 71.85 a.206.1.1 91707 1zboA 210 72.15 b.122.1.10 124859 3cpxA 321 72.73 1lqaA 346 72.82 c.1.7.1 84674 2o0tA 467 74.43 1rlhA 173 74.81 d.256.1.1 97646 2nvrA 423 75.22 1gz0A 253 75.61 c.116.1.1,d.79.3.3 76391,76392 2og2A 359 76.11 2h30A 164 76.30 2g2cA 167 76.40 c.57.1.1 134535 1auvA 311 79.28 c.30.1.5,d.142.1.3 31723,41558 1qopB 396 79.82 c.79.1.1 35270 1ut7A 171 80.20 b.143.1.1 99906 2q3mA 326 80.27 c.37.1.5 139795 2ho3A 325 80.52 2pjkA 178 80.60 1st9A 143 82.55 c.47.1.10 98987 1m1nA 491 84.00 c.92.2.3 78417 2e4uA 555 86.46 1xgkA 352 86.69 c.2.1.2 115286 1w32A 348 86.69 c.1.8.3 114120 2is8A 164 86.77 2o0bA 450 87.76 2c4wA 176 88.95