# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 2.06e-50 c.55.3.10 120785 1u04A 771 2.33e-50 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 0.4495 c.93.1.1 67406 1gudA 288 0.7332 c.93.1.1 83326 2yvtA 260 1.071 1f0iA 504 1.290 d.136.1.2,d.136.1.2 59566,59567 2qh9A 184 2.453 1zxxA 319 5.152 1mkzA 172 5.290 c.57.1.1 84998 1cfr 285 5.654 2j01Q 141 6.413 2fqxA 318 7.116 1zc6A 305 7.792 c.55.1.5,c.55.1.5 124888,124889 1iuqA 367 8.935 c.112.1.1 90703 1t9kA 347 9.234 c.124.1.5 106721 1tjyA 316 9.374 c.93.1.1 107062 2nxfA 322 9.379 1pfkA 320 10.08 c.89.1.1 35575 1v0wA 506 10.92 d.136.1.2,d.136.1.2 108220,108221 8abp 306 12.47 2pfkA 320 15.69 c.89.1.1 35577 1xngA 268 16.87 c.26.2.1 122186 2hy1A 280 18.34 1qh8A 478 18.80 c.92.2.3 35633 2tysA 268 19.02 c.1.2.4 28572 1kqfB 294 19.16 d.58.1.5,f.23.22.1 75900,75901 1vpt 348 19.44 2g7zA 282 19.82 1j0hA 588 21.18 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2pt0A 340 22.31 2pgfA 371 24.96 1zsxA 347 25.38 1m1nB 522 25.48 c.92.2.3 78418 1k30A 368 26.55 c.112.1.1 68067 2dri 271 26.77 1bu6O 501 27.19 c.55.1.4,c.55.1.4 33499,33500 1tl9A 339 29.75 d.3.1.3 112505 3bl6A 230 30.30 1jaeA 471 30.53 b.71.1.1,c.1.8.1 27773,28760 1khcA 147 31.54 b.34.9.2 68608 2g2cA 167 32.59 c.57.1.1 134535 1gakA 141 33.51 a.19.1.1 16415 2fvgA 340 33.63 b.49.3.1,c.56.5.4 134201,134202 1r85A 379 35.12 c.1.8.3 104839 1xzoA 174 35.20 c.47.1.10 122474 2hq9A 149 35.71 b.45.1.1 136659 1dbqA 289 36.16 c.93.1.1 35666 2dskA 311 37.11 1y44A 320 37.79 d.157.1.7 122608 1o2dA 371 38.26 e.22.1.2 86591 2o0bA 450 39.05 1xgkA 352 39.11 c.2.1.2 115286 2dxnA 274 39.37 2bwjA 199 39.74 2hqbA 296 41.13 1q77A 138 41.17 c.26.2.4 96023 2qwxA 231 41.80 1w32A 348 42.60 c.1.8.3 114120 2r8wA 332 42.81 2nyiA 195 44.75 2gqwA 408 46.56 2f48A 555 46.72 c.89.1.1 132915 1st9A 143 48.96 c.47.1.10 98987 1yloA 348 48.97 b.49.3.1,c.56.5.4 123659,123660 1gz0A 253 49.38 c.116.1.1,d.79.3.3 76391,76392 1wxiA 275 49.64 c.26.2.1 121400 1wvgA 359 50.55 c.2.1.2 121339 1ujpA 271 53.72 c.1.2.4 99462 2c4wA 176 54.05 1cqxA 403 54.35 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1vheA 373 56.18 b.49.3.1,c.56.5.4 100669,100670 1m7xA 617 56.67 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1usgA 346 57.36 c.93.1.1 99864 1gvhA 396 59.03 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 3mag 307 59.58 2csuA 457 61.43 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1mdbA 539 61.55 e.23.1.1 79008 2ebn 289 61.83 1tqxA 227 61.99 c.1.2.2 112614 1v39 322 62.25 1yb0A 159 62.32 d.118.1.1 122865 2qkfA 280 62.55 1w3iA 293 63.34 c.1.10.1 109152 1f75A 249 63.44 c.101.1.1 59662 1qsoA 149 63.55 d.108.1.1 40812 2bijA 305 63.97 1uozA 315 64.48 c.6.1.1 113354 1i5gA 144 65.90 c.47.1.10 61784 2db3A 434 66.20 1vkcA 158 66.68 d.108.1.1 113663 2f5tX 233 67.14 1u4nA 310 67.31 c.69.1.2 113021 2dhqA 146 67.95 c.23.13.1 31382 1clxA 347 68.26 c.1.8.3 28899 2afbA 351 69.76 c.72.1.1 126674 1d0iA 156 69.96 c.23.13.1 31383 1gtzA 156 70.12 c.23.13.1 70539 2apjA 260 71.11 c.23.10.7 127128 2v5xA 388 73.70 1ut7A 171 74.46 b.143.1.1 99906 1vpvA 300 74.93 c.119.1.1 113975 1gt6A 269 76.18 c.69.1.17 76342 2vfxA 206 77.38 2pjkA 178 78.55 2zivA 311 78.70 1h3gA 601 79.26 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 3cpxA 321 79.63 1vi9A 299 80.92 c.72.1.5 100750 1i1wA 303 81.68 c.1.8.3 76732 1ve1A 304 81.72 c.79.1.1 120007 1j5wA 298 82.14 d.104.1.1 71589 2yvqA 143 82.15 2liv 344 82.35 1z15A 344 84.01 1fuiA 591 84.60 b.43.2.1,c.85.1.1 25674,35444 2purA 292 84.98 1jubA 311 85.05 c.1.4.1 90908 1hdoA 206 85.70 c.2.1.2 60965 1aj2 282 86.01 2v9dA 343 87.28 2o2yA 349 87.90 c.2.1.2 138894 2vupA 190 88.86