# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 1.86e-50 c.55.3.10 120785 1u04A 771 5.85e-50 b.34.14.1,c.55.3.10 107539,107540 1gudA 288 0.4869 c.93.1.1 83326 1jx6A 342 0.5681 c.93.1.1 67406 2qh9A 184 1.938 2yvtA 260 2.781 1cfr 285 3.773 1mkzA 172 5.076 c.57.1.1 84998 1zsxA 347 5.846 1f0iA 504 6.785 d.136.1.2,d.136.1.2 59566,59567 2j01Q 141 7.372 2nxfA 322 7.546 1iuqA 367 7.802 c.112.1.1 90703 2pt0A 340 9.268 1k30A 368 9.886 c.112.1.1 68067 1zc6A 305 10.67 c.55.1.5,c.55.1.5 124888,124889 1t9kA 347 11.33 c.124.1.5 106721 2fqxA 318 11.41 2hy1A 280 11.61 1vpt 348 12.93 1tjyA 316 13.20 c.93.1.1 107062 1j0hA 588 15.85 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1bu6O 501 16.05 c.55.1.4,c.55.1.4 33499,33500 2tysA 268 16.14 c.1.2.4 28572 2gqwA 408 16.54 1zxxA 319 18.02 1gt6A 269 20.33 c.69.1.17 76342 2hqbA 296 21.78 2g7zA 282 21.86 1qh8A 478 22.32 c.92.2.3 35633 1xw2A 405 23.42 a.102.1.2 122389 2p3rA 510 23.66 c.55.1.4,c.55.1.4 139471,139472 1wxiA 275 23.70 c.26.2.1 121400 1exbA 332 24.61 c.1.7.1 28666 2dri 271 24.99 1m1nB 522 25.35 c.92.2.3 78418 1clxA 347 26.15 c.1.8.3 28899 1khcA 147 26.71 b.34.9.2 68608 2dxnA 274 26.79 1rlhA 173 27.26 d.256.1.1 97646 2pgfA 371 29.17 2vfxA 206 29.27 1r85A 379 29.49 c.1.8.3 104839 1xngA 268 30.29 c.26.2.1 122186 2hq9A 149 32.49 b.45.1.1 136659 2bwjA 199 34.61 8abp 306 34.68 1o2dA 371 37.17 e.22.1.2 86591 1m7xA 617 37.83 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2f5tX 233 38.88 1r59O 505 39.38 c.55.1.4,c.55.1.4 111697,111698 1ra6A 461 39.49 e.8.1.4 104879 1i2cA 404 39.78 c.2.1.2 83666 1gakA 141 40.39 a.19.1.1 16415 1usgA 346 40.72 c.93.1.1 99864 1v39 322 41.75 1w3iA 293 42.35 c.1.10.1 109152 1tqxA 227 42.36 c.1.2.2 112614 1dbqA 289 42.82 c.93.1.1 35666 1dp4A 435 42.82 c.93.1.1 35710 1xzoA 174 43.09 c.47.1.10 122474 1lqaA 346 43.93 c.1.7.1 84674 1vpvA 300 44.91 c.119.1.1 113975 2fvgA 340 46.26 b.49.3.1,c.56.5.4 134201,134202 1vheA 373 46.68 b.49.3.1,c.56.5.4 100669,100670 1f75A 249 47.14 c.101.1.1 59662 2r8wA 332 47.22 1q77A 138 47.88 c.26.2.4 96023 1gveA 327 48.64 c.1.7.1 70597 1pfkA 320 48.73 c.89.1.1 35575 1uozA 315 49.15 c.6.1.1 113354 3bl6A 230 50.87 2csuA 457 51.18 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2f48A 555 51.31 c.89.1.1 132915 1h3gA 601 53.02 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1vi9A 299 53.13 c.72.1.5 100750 2pfkA 320 54.01 c.89.1.1 35577 1xgkA 352 54.04 c.2.1.2 115286 1mdbA 539 57.98 e.23.1.1 79008 1jaeA 471 58.04 b.71.1.1,c.1.8.1 27773,28760 1v0wA 506 59.10 d.136.1.2,d.136.1.2 108220,108221 2bijA 305 59.54 1w32A 348 59.63 c.1.8.3 114120 3d0kA 304 59.72 2purA 292 60.32 2qkfA 280 60.33 1jubA 311 60.44 c.1.4.1 90908 1tl9A 339 60.70 d.3.1.3 112505 2higA 487 61.03 1aj2 282 61.31 2g2cA 167 62.36 c.57.1.1 134535 2nyiA 195 63.09 2v9dA 343 63.83 2rfgA 297 64.07 1ta3B 303 64.09 c.1.8.3 106732 1i5gA 144 65.48 c.47.1.10 61784 2uytA 489 65.63 1y44A 320 66.23 d.157.1.7 122608 2b99A 156 67.05 3cq9A 227 68.25 2q8uA 336 69.00 3mag 307 70.00 1lhpA 312 71.35 c.72.1.5 77960 1kqfB 294 71.50 d.58.1.5,f.23.22.1 75900,75901 2db3A 434 72.96 2o2yA 349 74.60 c.2.1.2 138894 1ujpA 271 74.87 c.1.2.4 99462 2ehhA 294 76.52 1gvhA 396 76.81 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1st9A 143 76.89 c.47.1.10 98987 2pcqA 283 77.24 1yloA 348 77.76 b.49.3.1,c.56.5.4 123659,123660 2v5xA 388 77.81 2gwhA 298 78.70 2zf5O 497 79.01 2afbA 351 79.69 c.72.1.1 126674 2dskA 311 80.24 1i1wA 303 80.51 c.1.8.3 76732 2o0tA 467 82.00 3cpxA 321 83.30 2e4uA 555 84.60 1gz0A 253 85.41 c.116.1.1,d.79.3.3 76391,76392 1w0hA 204 85.69 c.55.3.5 114064 1z15A 344 85.95 1fuiA 591 86.08 b.43.2.1,c.85.1.1 25674,35444 1ynfA 458 86.15 d.126.1.7 123723 2d16A 162 86.64 1sffA 426 87.45 c.67.1.4 105482 2c4wA 176 87.71 1pz1A 333 88.44 c.1.7.1 95390