# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 8.68e-31 c.55.3.10 120785 1u04A 771 1.66e-30 b.34.14.1,c.55.3.10 107539,107540 1jx6A 342 0.3743 c.93.1.1 67406 2o0tA 467 0.5185 1gudA 288 0.6202 c.93.1.1 83326 8abp 306 1.140 1gca 309 1.678 2dri 271 2.756 2hqbA 296 3.029 1tjyA 316 3.642 c.93.1.1 107062 2fqxA 318 5.154 2qulA 290 6.688 1m1nB 522 6.884 c.92.2.3 78418 2f48A 555 7.820 c.89.1.1 132915 8abpA 306 8.590 c.93.1.1 35647 1dbqA 289 10.93 c.93.1.1 35666 2yvtA 260 10.99 2hy1A 280 11.73 1u0mA 382 11.88 c.95.1.2,c.95.1.2 107557,107558 2q62A 247 15.01 1gtzA 156 15.70 c.23.13.1 70539 2rjoA 332 16.97 2c4wA 176 17.88 1d0iA 156 17.95 c.23.13.1 31383 2fvyA 309 18.21 c.93.1.1 134227 1tufA 434 18.94 b.49.2.3,c.1.6.1 107335,107336 1m1nA 491 19.62 c.92.2.3 78417 2fepA 289 20.45 1h05A 146 20.89 c.23.13.1 76433 1avaA 403 21.34 b.71.1.1,c.1.8.1 27797,28784 1qh8A 478 21.73 c.92.2.3 35633 1twiA 434 24.41 b.49.2.3,c.1.6.1 107399,107400 2f5tX 233 24.43 2dhqA 146 24.84 c.23.13.1 31382 2r8wA 332 26.02 2ebdA 309 26.29 2ioyA 283 26.40 2q8uA 336 26.89 2qh9A 184 28.03 2qvcA 313 28.88 1xesA 413 29.87 2ar9A 278 31.38 1w3iA 293 31.51 c.1.10.1 109152 1amy 403 31.71 2h3hA 313 31.91 2dxnA 274 32.56 3cpxA 321 32.64 2driA 271 32.75 c.93.1.1 35637 2fn9A 290 32.96 3ch3X 265 34.17 2pw6A 271 34.39 1ex2A 189 37.66 c.51.4.2 33225 1tl9A 339 37.91 d.3.1.3 112505 1mkzA 172 38.20 c.57.1.1 84998 1tlfA 301 38.51 c.93.1.1 35687 2nuwA 288 38.92 2v3gA 283 39.56 1bykA 255 40.14 c.93.1.1 35706 1y44A 320 40.50 d.157.1.7 122608 1lwjA 441 41.32 b.71.1.1,c.1.8.1 74303,74304 2rgyA 290 41.57 1ujpA 271 42.55 c.1.2.4 99462 1uuqA 440 42.66 c.1.8.3 100015 1hzpA 335 43.22 c.95.1.2,c.95.1.2 61455,61456 2p5xA 230 43.33 2qh8A 302 43.78 1tedA 393 44.69 c.95.1.2 106807 2pjkA 178 45.51 3d02A 303 46.54 2ch4A 320 47.32 b.40.7.1,d.122.1.3 130447,130448 1zxxA 319 48.13 1kfcA 268 48.52 c.1.2.4 77371 2yw2A 424 48.87 1o8xA 146 48.89 c.47.1.10 86681 1pyfA 312 49.01 c.1.7.1 95334 1z15A 344 49.29 1cbgA 490 49.87 c.1.8.4 28933 2is8A 164 49.88 2acvA 463 51.32 2gp5A 349 51.66 1pbgA 468 51.95 c.1.8.4 28946 1xmxA 385 52.80 c.52.1.26 115568 2nyiA 195 53.06 2b5dX 528 53.41 a.8.3.3,c.6.2.4 127886,127887 1yslA 402 53.74 2e1vA 454 53.77 1lt8A 406 55.32 c.1.26.1 78186 2qdkA 252 57.99 1cfr 285 61.19 1rttA 193 61.58 c.23.5.4 105098 1mzjA 339 63.48 c.95.1.2,c.95.1.2 79700,79701 1jftA 340 66.18 a.35.1.5,c.93.1.1 66652,66653 1exbA 332 66.38 c.1.7.1 28666 1g2oA 268 69.84 c.56.2.1 60228 1zsxA 347 70.48 2pfkA 320 71.99 c.89.1.1 35577 2r91A 286 72.37 1cqqA 180 72.71 b.47.1.4 26422 1us0A 316 73.33 c.1.7.1 99850 1f0iA 504 73.53 d.136.1.2,d.136.1.2 59566,59567 1i5gA 144 73.83 c.47.1.10 61784 2aaaA 484 74.62 b.71.1.1,c.1.8.1 27777,28764 1g67A 225 75.44 c.1.3.1 60311 1m7xA 617 75.69 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 2liv 344 76.64 2d1zA 436 77.62 1zu4A 320 78.58 1yzyA 413 78.93 c.146.1.1 124292 1lqaA 346 79.35 c.1.7.1 84674 2jf7A 532 79.47 1kngA 156 79.97 c.47.1.10 72777 2pe3A 354 80.05 1rpxA 230 80.95 c.1.2.2 28536 1yloA 348 80.99 b.49.3.1,c.56.5.4 123659,123660 2ox0A 381 81.76 1uf3A 228 82.35 d.159.1.6 99317 2aeeA 211 82.43 c.61.1.1 126620 1s2dA 167 82.67 c.23.14.1 98377 1usgA 346 82.90 c.93.1.1 99864 2vapA 364 82.99 1o2dA 371 84.00 e.22.1.2 86591 1iow 306 84.07 2ekcA 262 84.10 1ekeA 230 87.28 c.55.3.1 33572 2fy6A 143 87.87 c.47.1.10 134344 3c6qA 311 88.52 2amxA 376 89.01 c.1.9.1 127024