# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1w9hA 427 2.51e-16 c.55.3.10 120785 1u04A 771 5.26e-16 b.34.14.1,c.55.3.10 107539,107540 2qvcA 313 2.606 1mzjA 339 4.689 c.95.1.2,c.95.1.2 79700,79701 2dri 271 4.704 2fepA 289 5.537 2driA 271 7.043 c.93.1.1 35637 2nxfA 322 7.285 2yw2A 424 7.846 3brqA 296 8.480 1gudA 288 8.868 c.93.1.1 83326 2ioyA 283 8.892 8abp 306 9.836 1hnjA 317 10.67 c.95.1.2,c.95.1.2 35969,35970 2bryA 497 12.39 1zq1A 438 12.56 b.38.3.1,c.88.1.1 125489,125490 1u6eA 335 13.32 c.95.1.2,c.95.1.2 119568,119569 2qhpA 296 14.18 1o2dA 371 14.70 e.22.1.2 86591 1h05A 146 14.82 c.23.13.1 76433 1qvbA 481 14.86 c.1.8.4 28983 3bilA 348 15.29 1zczA 464 15.74 c.24.1.3,c.97.1.4 124923,124924 1xpmA 396 15.88 c.95.1.2,c.95.1.2 115759,115760 1hzpA 335 16.38 c.95.1.2,c.95.1.2 61455,61456 2dhqA 146 16.61 c.23.13.1 31382 2glxA 332 17.09 1ehiA 377 17.59 c.30.1.2,d.142.1.1 31716,41484 2vupA 190 17.60 2fqxA 318 17.69 2ywnA 157 18.19 2o20A 332 18.29 1tedA 393 19.85 c.95.1.2 106807 2podA 410 20.39 2hy1A 280 23.56 2c4wA 176 23.58 1bykA 255 23.82 c.93.1.1 35706 1wohA 305 25.89 c.42.1.1 109446 1m1nA 491 25.96 c.92.2.3 78417 2rgyA 290 26.65 1jx6A 342 26.78 c.93.1.1 67406 1xpkC 388 26.92 c.95.1.2,c.95.1.2 115747,115748 2eq5A 228 26.93 2qv7A 337 27.17 2ebdA 309 28.12 1mxgA 435 28.15 b.71.1.1,c.1.8.1 85193,85194 1tvzA 388 28.23 c.95.1.2,c.95.1.2 107367,107368 1vpvA 300 28.61 c.119.1.1 113975 2qh8A 302 29.65 1i7qB 193 29.84 c.23.16.1 61902 1stzA 338 30.29 a.4.5.51,d.110.2.3 106009,106010 1xesA 413 30.33 3brsA 289 32.03 2fvyA 309 32.20 c.93.1.1 134227 2vbaA 406 33.51 1gca 309 34.36 1eyzA 392 35.34 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1an9A 340 35.43 c.4.1.2,d.16.1.3 30617,37904 2h3hA 313 35.76 1woqA 267 35.93 c.55.1.10,c.55.1.10 109462,109463 2gp6A 434 36.28 2oo6A 409 36.37 2ffiA 288 36.58 c.1.9.15 133385 1kjqA 391 38.50 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1dbqA 289 38.64 c.93.1.1 35666 2nwhA 317 40.01 1iow 306 40.03 2aa4A 289 40.86 c.55.1.10,c.55.1.10 126465,126466 1iuqA 367 41.12 c.112.1.1 90703 2dc0A 434 42.46 1f0xA 571 42.79 d.58.32.2,d.145.1.1 39483,41746 1mgpA 313 43.20 c.119.1.1 79098 1i88A 389 43.38 c.95.1.2,c.95.1.2 66070,66071 1d0iA 156 43.52 c.23.13.1 31383 1zowA 313 43.73 1g8mA 593 44.55 c.24.1.3,c.97.1.4 60371,60372 1gowA 489 44.62 c.1.8.4 28981 2o2yA 349 44.68 c.2.1.2 138894 2yvtA 260 46.76 2ajrA 331 48.06 c.72.1.1 126892 2qh9A 184 48.15 2i87A 364 48.69 2yrxA 451 49.09 2f02A 323 51.53 c.72.1.1 132649 2d51A 406 53.58 2c1gA 431 54.69 c.6.2.3,d.341.1.1 129632,129633 1s9rA 410 55.25 d.126.1.4 98758 1tzzA 392 57.04 c.1.11.2,d.54.1.1 112896,112897 2q01A 497 58.75 1bx4A 345 59.01 c.72.1.1 34935 1wl8A 189 59.82 c.23.16.1 120997 1fmtA 314 59.95 b.46.1.1,c.65.1.1 25758,34174 1qh8A 478 60.15 c.92.2.3 35633 2fr1A 486 60.36 c.2.1.2,c.2.1.2 133961,133962 1ez4A 318 61.55 c.2.1.5,d.162.1.1 64917,64918 1gtzA 156 61.65 c.23.13.1 70539 1vm6A 228 61.91 d.81.1.3,c.2.1.3 108877,118631 1vjrA 271 62.10 c.108.1.14 100832 1sz2A 332 62.42 c.55.1.7 112169 2obiA 183 62.77 1yx1A 264 63.03 c.1.15.7 124169 1tz9A 367 63.26 c.1.15.6 107466 1f0kA 364 63.45 c.87.1.2 35465 1ymqA 261 63.77 c.108.1.10 123707 2oosA 338 64.43 2h3gX 268 65.45 8abpA 306 66.04 c.93.1.1 35647 3c3kA 285 66.65 1qdlB 195 66.74 c.23.16.1 31437 2fn9A 290 67.15 1st9A 143 67.29 c.47.1.10 98987 1yexA 186 68.49 c.47.1.10 123021 1ixcA 294 68.73 a.4.5.37,c.94.1.1 83764,83765 1d4fA 431 69.03 c.2.1.4,c.23.12.3 30110,31370 1uqrA 154 70.18 c.23.13.1 99779 1uwsA 489 70.89 c.1.8.4 108073 2bywA 418 71.28 c.95.1.1,c.95.1.1 129498,129499 1ii7A 333 71.41 d.159.1.4 62415 1hdoA 206 71.74 c.2.1.2 60965 1zl0A 311 72.55 c.8.10.1,c.23.16.7 125231,125232 3b8xA 390 72.68 1zcoA 262 73.72 1ek4A 418 73.86 c.95.1.1,c.95.1.1 59436,59437 1tqyA 424 74.38 c.95.1.1,c.95.1.1 107245,107246 2hpgA 327 75.73 3ce9A 354 76.07 2e9lA 469 76.44 2gupA 292 76.47 c.55.1.10,c.55.1.10 135744,135745 1iowA 306 78.08 c.30.1.2,d.142.1.1 31713,41481 1k30A 368 78.11 c.112.1.1 68067 1cs1A 386 79.00 c.67.1.3 34399 2z67A 456 79.07 2gl5A 410 80.36 c.1.11.2,d.54.1.1 135336,135337 1kngA 156 83.03 c.47.1.10 72777 1tyyA 339 83.21 c.72.1.1 112850 2liv 344 83.39 1zyeA 220 83.97 c.47.1.10 125817 1g2oA 268 84.04 c.56.2.1 60228 1ve9A 347 84.13 c.4.1.2,d.16.1.3 100571,100572 4pgaA 337 84.45 c.88.1.1 35565 2bmxA 195 84.60 c.47.1.10 128817 3bc8A 450 85.52 2dfaA 250 86.11 c.6.2.5 131469 2o56A 407 87.06 2douA 376 87.52 1vpqA 273 89.41 c.1.32.1 113974 1pbgA 468 89.73 c.1.8.4 28946