# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fyxA 143 5.67e-02 d.58.57.1 134411 1wc1A 226 2.01e-01 d.58.29.1 114492 1k3xA 262 2.72e-01 a.156.1.2 77242 b.113.1.1 77243 g.39.1.8 77244 1wc3A 219 3.27e-01 d.58.29.1 114495 1d2mA 665 4.52e-01 1d2mA c.37.1.19 32417 c.37.1.19 32418 1x1fA 149 6.66e-01 b.55.1.1 121579 1c4oA 664 7.70e-01 1d2mA c.37.1.19 32415 c.37.1.19 32416 1s4kA 120 1.21e+00 a.35.1.6 105254 1dgsA 667 1.41e+00 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1u53A 196 1.66e+00 2i5nC 336 2.20e+00 a.138.1.2 137063 1j3mA 129 2.20e+00 d.129.7.1 103836 1dxrC 336 2.20e+00 6prcC a.138.1.2 19670 2daqA 110 2.22e+00 b.34.9.2 131354 5cytR 104 2.35e+00 1ycc a.3.1.1 15878 3c2cA 112 2.94e+00 a.3.1.1 15885 2aiuA 105 2.96e+00 1qnxA 209 2.99e+00 1qnxA d.111.1.1 40914 1odmA 331 3.33e+00 b.82.2.1 86875 2o35A 105 3.80e+00 1v2xA 194 3.83e+00 c.116.1.1 100274 1bgpA 309 3.90e+00 a.93.1.1 18690 1ztsA 139 3.90e+00 2c0dA 221 4.24e+00 1xo0A 324 4.26e+00 a.60.9.1 115674 d.163.1.1 115675 1sxjC 340 4.43e+00 a.80.1.1 106085 c.37.1.20 106086 1ic8A 194 4.50e+00 a.4.1.1 76740 a.35.1.1 76741 1m3kA 392 4.56e+00 c.95.1.1 78565 c.95.1.1 78566 4crxA 322 4.68e+00 4crxA a.60.9.1 18095 d.163.1.1 42155 1va6A 518 5.65e+00 d.128.1.4 113598 1khtA 192 5.72e+00 c.37.1.1 84401 1l2iA 261 5.99e+00 a.123.1.1 73503 1akhA 61 6.08e+00 1akhA a.4.1.1 15980 3erdA 261 6.22e+00 3erdA a.123.1.1 19293 1qydA 313 6.34e+00 c.2.1.2 96583 1m4tA 392 6.48e+00 c.95.1.1 78617 c.95.1.1 78618 1crxA 322 6.51e+00 4crxA a.60.9.1 18097 d.163.1.1 42157 2cwpA 112 7.02e+00 1ea0A 1479 7.77e+00 b.80.4.1 64854 c.1.4.1 64855 d.153.1.1 64856 2b4zA 104 7.89e+00 1xn8A 131 8.00e+00 a.229.1.1 115577 1f75A 249 8.26e+00 1f75A c.101.1.1 59662 2ciuA 127 8.65e+00 1bqnA 558 8.68e+00 1rthA c.55.3.1 33599 e.8.1.2 43064 1rkqA 282 8.76e+00 c.108.1.10 97621 2rdyA 803 9.06e+00 2czlA 272 9.07e+00 c.94.1.1 131055 1f44A 324 9.30e+00 a.60.9.1 64982 d.163.1.1 64983 2hhiA 204 9.44e+00 2i5hA 205 9.73e+00 3crxA 343 9.75e+00 4crxA a.60.9.1 18101 d.163.1.1 42161 1yptA 305 9.86e+00 1ytw c.45.1.2 32686 1qflA 389 9.92e+00 1afwA c.95.1.1 35908 c.95.1.1 35909 1eysC 382 1.03e+01 6prcC a.138.1.2 19678 1mtzA 293 1.03e+01 c.69.1.7 79467 3cjeA 167 1.04e+01 1duvG 333 1.07e+01 1othA c.78.1.1 35228 c.78.1.1 35229 1bqg 451 1.12e+01 1bqg 2yxlA 450 1.13e+01 1xxpA 306 1.14e+01 c.45.1.2 122423 1kbuA 349 1.20e+01 a.60.9.1 72284 d.163.1.1 72285 1lyvA 306 1.21e+01 c.45.1.2 74348 1xqwA 293 1.23e+01 1ag4 103 1.24e+01 1ag4 1zjrA 211 1.25e+01 2e74G 37 1.26e+01 f.23.26.1 132052 3cjhB 64 1.29e+01 2i6uA 307 1.31e+01 1dloA 556 1.31e+01 1rthA c.55.3.1 33584 e.8.1.2 43040 1hniA 558 1.31e+01 1rthA c.55.3.1 33586 e.8.1.2 43044 1ozhA 566 1.31e+01 c.31.1.3 93833 c.36.1.5 93834 c.36.1.9 93835 1ytw 306 1.33e+01 1ytw 1ndbA 596 1.33e+01 c.43.1.3 80411 c.43.1.3 80412 1ycc 108 1.35e+01 1ycc 1yccA 108 1.35e+01 a.3.1.1 15834 1z4eA 153 1.38e+01 d.108.1.1 124431 2odaA 196 1.40e+01 2pfzA 301 1.44e+01 1lfb 99 1.46e+01 1lfb 1lfbA 99 1.46e+01 a.4.1.1 15989 2oikA 154 1.57e+01 2dznB 82 1.60e+01 1zyeA 220 1.61e+01 c.47.1.10 125817 1v5xA 203 1.72e+01 c.1.2.4 100377 2gasA 307 1.75e+01 1tikA 213 1.78e+01 c.23.5.3 107003 1hroA 106 1.79e+01 1ycc a.3.1.1 15897 1kjsA 74 1.81e+01 a.50.1.1 17792 2nsfA 261 1.81e+01 2pqqA 149 1.84e+01 1vajA 214 1.89e+01 d.309.1.1 119907 1yrnA 61 1.89e+01 1akhA a.4.1.1 15981 2pgzA 230 1.90e+01 2hm7A 310 1.91e+01 1xebA 150 2.00e+01 d.108.1.1 115219 3cbtA 237 2.04e+01 1squA 155 2.11e+01 d.252.1.1 98971 3bxtA 257 2.13e+01 1d0cA 444 2.16e+01 d.174.1.1 64769 2qptA 550 2.16e+01 2nudC 35 2.17e+01 1eetB 427 2.18e+01 1rthA e.8.1.2 43079 2b10B 108 2.21e+01 1m9nA 613 2.28e+01 c.24.1.3 78870 c.97.1.4 78871 1g8mA 593 2.32e+01 1g8mA c.24.1.3 60371 c.97.1.4 60372 1ed5A 444 2.37e+01 1nseA d.174.1.1 42530 2dlaA 222 2.39e+01 2b11B 108 2.44e+01 2b0zB 108 2.45e+01 1jk0A 419 2.45e+01 a.25.1.2 63142 2dyjA 95 2.45e+01 1r5pA 108 2.50e+01 c.47.1.15 97101 1fkoA 543 2.51e+01 1rthA c.55.3.1 33612 e.8.1.2 43094 1pjcA 361 2.52e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 2gdtA 116 2.52e+01 1apxA 249 2.59e+01 1ryc a.93.1.1 18669 1fit 147 2.59e+01 1fit 1fitA 147 2.59e+01 d.13.1.1 37499 1c1bB 440 2.64e+01 1rthA e.8.1.2 43077 1ql3A 99 2.69e+01 1ycc a.3.1.1 15822 1ih7A 903 2.72e+01 1clqA c.55.3.5 62375 e.8.1.1 62376 3c19A 186 2.73e+01 1js8A 394 2.84e+01 a.86.1.1 67219 b.112.1.1 67220 1i8vA 96 2.85e+01 d.1.1.2 61985 1clqA 903 2.86e+01 1clqA c.55.3.5 33717 e.8.1.1 43006 1vjyA 303 2.88e+01 d.144.1.7 108633 1wwjA 105 2.89e+01 1t5bA 201 2.91e+01 c.23.5.3 106433 2fltA 149 2.93e+01 1ghhA 81 2.94e+01 1ghhA d.57.1.1 38940 1rgeA 96 2.96e+01 1rgeA d.1.1.2 36028 2pk8A 103 2.98e+01 d.274.1.1 139707 2hfnA 153 3.00e+01 1py5A 326 3.01e+01 d.144.1.7 104389 1fkoB 440 3.02e+01 1rthA e.8.1.2 43095 1v54C 261 3.03e+01 f.25.1.1 100324 2b12B 108 3.04e+01 1gmpA 96 3.05e+01 1rgeA d.1.1.2 36036 1k99A 99 3.06e+01 a.21.1.1 68341 2z98A 200 3.09e+01 2jdxA 385 3.09e+01 1jdw d.126.1.2 41139 1xeqA 103 3.10e+01 a.16.1.1 121915 1mgrA 99 3.10e+01 d.1.1.2 79106 1b6cB 342 3.15e+01 1b6cB d.144.1.7 41673 1jdw 423 3.15e+01 1jdw 1jdwA 423 3.15e+01 d.126.1.2 41129 1afvA 151 3.17e+01 1ak4C a.73.1.1 18324 1lis 136 3.19e+01 1lis 2lisA 136 3.19e+01 1lis a.19.1.1 16405 2vojA 371 3.19e+01 1ocrC 261 3.19e+01 1ocrC f.25.1.1 43540 1hniB 427 3.23e+01 1rthA e.8.1.2 43045 1gt0D 80 3.24e+01 a.21.1.1 76337 2vhxA 377 3.24e+01 1go5A 69 3.25e+01 a.5.2.3 65410 1sayA 361 3.25e+01 1sayA c.2.1.4 30102 c.23.12.2 31362 1wueA 386 3.34e+01 c.1.11.2 114892 d.54.1.1 114893 1j9iA 68 3.37e+01 a.6.1.5 71619 2j8mA 172 3.37e+01 1eetA 557 3.38e+01 1rthA c.55.3.1 33608 e.8.1.2 43078 1rthA 560 3.39e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1ym3A 215 3.41e+01 1k7cA 233 3.42e+01 c.23.10.4 68267 1em8A 147 3.45e+01 c.128.1.1 90457 1hxpA 348 3.46e+01 1guqA d.13.1.2 37530 d.13.1.2 37531 1deoA 233 3.47e+01 1deoA c.23.10.4 31345 1od6A 160 3.52e+01 c.26.1.3 86836 2z30B 65 3.52e+01 2z43A 324 3.54e+01 1yqzA 438 3.60e+01 1lniA 96 3.65e+01 d.1.1.2 74046 2zd1A 557 3.74e+01 2gakA 391 3.75e+01 2occC 261 3.81e+01 1ocrC f.25.1.1 43520 1ki9A 192 3.81e+01 c.37.1.1 84404 1qrdA 273 3.81e+01 1d4aA c.23.5.3 31217 1m22A 503 3.88e+01 c.117.1.1 78464 1vp7A 100 3.88e+01 a.7.13.1 113941 2gzaA 361 3.94e+01 2cyeA 133 3.99e+01 d.38.1.1 131021