Best Alignments for T0484

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1hdfA	2.3838e+01	1hdfA/T0484-1hdfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.11.1.1
2nudC	2.9329e+01	2nudC/T0484-2nudC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vr8A	3.2049e+01	1vr8A/T0484-1vr8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.312.1.1
1wxxA	3.3141e+01	1wxxA/T0484-1wxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.122.1.9 c.66.1.51
1rdsA	3.9669e+01	1rdsA/T0484-1rdsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.1.1.4
1g5cA	4.4618e+01	1g5cA/T0484-1g5cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.53.2.1
2as0A	4.6801e+01	2as0A/T0484-2as0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.122.1.9 c.66.1.51
3cjsA	4.7633e+01	3cjsA/T0484-3cjsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fl4A	5.3892e+01	2fl4A/T0484-2fl4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.108.1.1
3bgeA	5.6950e+01	3bgeA/T0484-3bgeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ayhA	6.1076e+01	2ayhA/T0484-2ayhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.29.1.2
2rauA	6.2082e+01	2rauA/T0484-2rauA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gt1A	6.5139e+01	2gt1A/T0484-2gt1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mveA	6.7212e+01	1mveA/T0484-1mveA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.29.1.2
2d49A	6.7421e+01	2d49A/T0484-2d49A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gvhA	6.9699e+01	2gvhA/T0484-2gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.38.1.1 d.38.1.1
1fusA	7.0682e+01	1fusA/T0484-1fusA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.1.1.4
1sv6A	7.0799e+01	1sv6A/T0484-1sv6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.177.1.1
2a6sA	7.1636e+01	2a6sA/T0484-2a6sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.298.1.1
3b7kA	7.2851e+01	3b7kA/T0484-3b7kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001