# TARGET T0484 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0484.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.42061 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.135 0.037 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.153 0.086 0.544 2 R 0.023 0.043 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.072 0.126 0.689 3 D 0.066 0.090 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.036 0.102 0.651 4 M 0.042 0.030 0.005 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.029 0.263 0.089 0.528 5 T 0.045 0.168 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.227 0.103 0.393 6 E 0.252 0.125 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.028 0.094 0.463 7 E 0.120 0.060 0.015 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.080 0.082 0.592 8 T 0.310 0.054 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.038 0.068 0.482 9 R 0.338 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.038 0.057 0.541 10 K 0.016 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.028 0.131 0.756 11 D 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.004 0.105 0.853 12 L 0.010 0.090 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.018 0.161 0.692 13 P 0.081 0.884 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.015 0.004 0.014 14 P 0.019 0.950 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.005 0.017 15 E 0.005 0.941 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.014 0.004 0.032 16 A 0.023 0.936 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.022 0.004 0.011 17 L 0.067 0.836 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.031 0.014 0.047 18 R 0.007 0.881 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.019 0.011 0.077 19 A 0.011 0.920 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.006 0.037 20 L 0.021 0.930 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.007 0.016 21 A 0.007 0.943 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.005 0.034 22 E 0.009 0.935 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.004 0.038 23 A 0.022 0.939 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.004 0.016 24 E 0.013 0.920 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.006 0.037 25 E 0.014 0.910 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.006 0.054 26 R 0.012 0.931 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.006 0.034 27 R 0.021 0.893 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.007 0.043 28 R 0.058 0.849 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.008 0.058 29 R 0.163 0.660 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.043 0.015 0.110 30 A 0.254 0.225 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.152 0.038 0.296 31 K 0.420 0.054 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.043 0.040 0.434 32 A 0.126 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.061 0.083 0.703 33 L 0.012 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.038 0.148 0.770 34 D 0.013 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.012 0.143 0.795 35 L 0.050 0.042 0.004 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.059 0.198 0.580 36 P 0.154 0.056 0.010 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.227 0.104 0.378 37 K 0.111 0.029 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.107 0.076 0.111 0.551 38 E 0.109 0.012 0.001 0.001 0.002 0.007 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.088 0.042 0.095 0.630 39 I 0.073 0.008 0.005 0.001 0.029 0.038 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.109 0.082 0.111 0.531 40 G 0.013 0.008 0.004 0.001 0.006 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.095 0.098 0.136 0.629 41 G 0.305 0.003 0.001 0.001 0.002 0.002 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.027 0.062 0.073 0.514 42 R 0.019 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.063 0.031 0.139 0.732 43 N 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.012 0.146 0.770 44 G 0.070 0.013 0.001 0.001 0.002 0.001 0.001 0.002 0.010 0.008 0.007 0.003 0.004 0.004 0.003 0.002 0.068 0.084 0.183 0.535 45 P 0.046 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.009 0.004 0.001 0.002 0.001 0.002 0.003 0.042 0.050 0.153 0.670 46 E 0.060 0.023 0.002 0.001 0.002 0.006 0.004 0.003 0.003 0.003 0.010 0.005 0.016 0.012 0.005 0.002 0.274 0.095 0.114 0.362 47 P 0.020 0.013 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.003 0.004 0.005 0.003 0.056 0.047 0.155 0.680 48 V 0.038 0.009 0.004 0.001 0.008 0.005 0.006 0.006 0.001 0.002 0.003 0.003 0.003 0.006 0.009 0.005 0.352 0.052 0.123 0.366 49 R 0.118 0.017 0.003 0.001 0.003 0.004 0.004 0.003 0.001 0.001 0.001 0.001 0.003 0.003 0.002 0.002 0.127 0.059 0.139 0.508 50 F 0.048 0.024 0.004 0.001 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.040 0.135 0.665 51 G 0.037 0.042 0.002 0.001 0.002 0.002 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.107 0.044 0.144 0.613 52 D 0.353 0.068 0.005 0.001 0.014 0.012 0.003 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.142 0.057 0.269 53 W 0.077 0.022 0.007 0.001 0.007 0.001 0.001 0.001 0.007 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.086 0.098 0.111 0.574 54 E 0.146 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.127 0.040 0.059 0.605 55 K 0.105 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.008 0.003 0.007 0.004 0.002 0.001 0.105 0.054 0.108 0.573 56 K 0.009 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.002 0.001 0.002 0.001 0.001 0.002 0.120 0.021 0.123 0.702 57 G 0.013 0.021 0.001 0.001 0.001 0.001 0.001 0.002 0.011 0.006 0.009 0.003 0.005 0.004 0.004 0.003 0.397 0.059 0.063 0.396 58 I 0.054 0.019 0.003 0.001 0.002 0.002 0.003 0.004 0.010 0.012 0.011 0.002 0.008 0.005 0.008 0.007 0.413 0.091 0.058 0.287 59 A 0.018 0.004 0.004 0.001 0.006 0.004 0.005 0.004 0.001 0.001 0.002 0.001 0.009 0.006 0.004 0.004 0.462 0.064 0.059 0.341 60 I 0.018 0.005 0.002 0.001 0.003 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.003 0.004 0.004 0.003 0.467 0.042 0.059 0.383 61 D 0.042 0.009 0.003 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.147 0.042 0.109 0.635 62 F 0.026 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.107 0.019 0.142 0.688