# TARGET T0484 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0484.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.42061 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.044 0.057 0.015 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.085 0.010 0.074 0.700 2 R 0.044 0.072 0.007 0.002 0.005 0.008 0.005 0.002 0.001 0.001 0.002 0.001 0.002 0.002 0.001 0.001 0.149 0.010 0.110 0.578 3 D 0.023 0.026 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.007 0.064 0.837 4 M 0.079 0.054 0.008 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.077 0.015 0.149 0.609 5 T 0.079 0.088 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.013 0.261 0.503 6 E 0.100 0.070 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.017 0.071 0.704 7 E 0.086 0.130 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.014 0.239 0.507 8 T 0.195 0.151 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.020 0.278 0.330 9 R 0.155 0.480 0.004 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.009 0.041 0.285 10 K 0.115 0.317 0.010 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.013 0.075 0.447 11 D 0.236 0.204 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.026 0.102 0.414 12 L 0.333 0.287 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.023 0.022 0.300 13 P 0.026 0.083 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.033 0.841 14 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 15 E 0.016 0.056 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.108 0.812 16 A 0.090 0.276 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.039 0.588 17 L 0.052 0.690 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.012 0.240 18 R 0.013 0.771 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.012 0.201 19 A 0.009 0.901 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.076 20 L 0.011 0.950 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.034 21 A 0.006 0.941 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.048 22 E 0.009 0.921 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.058 23 A 0.014 0.951 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.029 24 E 0.006 0.940 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.046 25 E 0.004 0.923 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.062 26 R 0.003 0.974 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.018 27 R 0.005 0.977 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.013 28 R 0.007 0.965 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.020 29 R 0.013 0.957 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.022 30 A 0.024 0.946 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.020 31 K 0.035 0.917 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.003 0.025 32 A 0.129 0.754 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.030 0.004 0.064 33 L 0.254 0.595 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.048 0.003 0.073 34 D 0.306 0.275 0.033 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.076 0.018 0.266 35 L 0.153 0.104 0.110 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.049 0.016 0.044 0.513 36 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 37 K 0.014 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.003 0.002 0.068 0.004 0.102 0.780 38 E 0.159 0.060 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.002 0.003 0.001 0.001 0.066 0.010 0.113 0.576 39 I 0.188 0.230 0.002 0.001 0.001 0.001 0.001 0.001 0.010 0.006 0.011 0.003 0.012 0.010 0.006 0.002 0.073 0.018 0.044 0.382 40 G 0.172 0.121 0.003 0.002 0.001 0.001 0.001 0.002 0.002 0.008 0.001 0.002 0.001 0.002 0.003 0.001 0.105 0.025 0.053 0.498 41 G 0.133 0.051 0.029 0.001 0.001 0.001 0.001 0.001 0.017 0.004 0.003 0.001 0.002 0.001 0.001 0.001 0.058 0.028 0.134 0.535 42 R 0.108 0.026 0.019 0.005 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.028 0.146 0.608 43 N 0.029 0.021 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.014 0.076 0.801 44 G 0.090 0.004 0.013 0.002 0.007 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.014 0.224 0.585 45 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 46 E 0.020 0.001 0.002 0.001 0.018 0.006 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.245 0.002 0.117 0.573 47 P 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.003 0.991 48 V 0.019 0.002 0.001 0.001 0.009 0.002 0.006 0.005 0.001 0.001 0.001 0.001 0.003 0.004 0.008 0.001 0.751 0.002 0.035 0.148 49 R 0.020 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.181 0.002 0.210 0.567 50 F 0.020 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.003 0.002 0.001 0.002 0.003 0.006 0.002 0.458 0.005 0.068 0.401 51 G 0.024 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.003 0.001 0.007 0.025 0.003 0.215 0.009 0.230 0.462 52 D 0.063 0.010 0.004 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.011 0.002 0.011 0.011 0.001 0.001 0.053 0.013 0.332 0.486 53 W 0.066 0.026 0.006 0.002 0.001 0.001 0.001 0.001 0.002 0.006 0.011 0.001 0.020 0.002 0.001 0.001 0.111 0.019 0.104 0.620 54 E 0.030 0.070 0.004 0.001 0.002 0.004 0.001 0.001 0.024 0.028 0.001 0.001 0.002 0.001 0.001 0.001 0.054 0.008 0.504 0.268 55 K 0.210 0.099 0.013 0.002 0.007 0.004 0.008 0.003 0.065 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.055 0.029 0.123 0.378 56 K 0.100 0.327 0.004 0.003 0.003 0.004 0.005 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.030 0.034 0.434 57 G 0.340 0.044 0.064 0.002 0.003 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.113 0.150 0.052 0.222 58 I 0.134 0.016 0.128 0.005 0.001 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.182 0.018 0.109 0.398 59 A 0.015 0.014 0.012 0.006 0.024 0.008 0.006 0.003 0.001 0.001 0.001 0.001 0.003 0.002 0.004 0.002 0.539 0.006 0.034 0.322 60 I 0.032 0.016 0.004 0.004 0.049 0.065 0.082 0.019 0.001 0.001 0.001 0.002 0.006 0.007 0.004 0.003 0.371 0.006 0.060 0.267 61 D 0.021 0.016 0.002 0.001 0.001 0.005 0.007 0.005 0.007 0.006 0.010 0.002 0.008 0.005 0.006 0.008 0.402 0.007 0.068 0.414 62 F 0.021 0.021 0.004 0.001 0.001 0.001 0.001 0.001 0.009 0.004 0.003 0.001 0.004 0.002 0.002 0.002 0.425 0.006 0.063 0.429