# List of top-scoring protein chains for T0484.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1odmA 331 2.092 b.82.2.1 86875 2bjsA 325 2.097 b.82.2.1 128632 1akhA 61 19.02 a.4.1.1 15980 1yrnA 61 28.24 a.4.1.1 15981 2c9tA 217 40.43 1le8A 53 41.14 a.4.1.1 73867 2bypA 214 50.01 3c84A 227 53.45 2pgzA 230 54.10 2iecA 131 60.42 d.316.1.1 137300 1balA 51 62.59 a.9.1.1 16357 1jk0B 345 77.42 a.25.1.2 63143 1w4hA 47 85.34 a.9.1.1 120626 1fgpA 70 85.94 b.37.1.1 24795 2btgA 47 89.84