# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b7kA	333	12.60		
1d4aA	273	13.16	c.23.5.3	31219
1k30A	368	16.11	c.112.1.1	68067
1cqmA	101	24.34	d.58.14.1	39321
1nvpD	108	24.37	a.32.1.1,b.56.1.1	92213,92214
1konA	249	29.26	e.39.1.1	72823
1auoA	218	29.32	c.69.1.14	34716
2oiwA	136	34.41		
1nh2D	121	37.45	a.32.1.1,b.56.1.1	91876,91877
1xl3C	92	37.56	a.243.1.1	122104
2oafA	151	37.76		
2chgA	226	38.42		
1qrdA	273	41.52	c.23.5.3	31217
1kmkA	406	42.92	c.67.1.3	68696
2bzsA	236	44.66	c.23.5.3	129560
1mw7A	240	47.51	e.39.1.1	79557
2oqoA	200	47.88		
2d3dA	88	49.71		
2as0A	396	50.96	b.122.1.9,c.66.1.51	127227,127228
2igtA	332	51.40	c.66.1.51	137401
1gyzA	60	51.58	a.144.2.1	70793
1ajsA	412	55.99	c.67.1.1	34276
2nudC	35	56.19		
1gh8A	89	56.30	d.58.12.1	39309
2aliA	158	56.58	d.38.1.1	126976
1ekfA	365	58.33	e.17.1.1	59445
2p71A	132	60.89	a.39.2.1	139516
1vmbA	140	62.11	d.58.14.1	113672
2uv0E	175	66.26		
1g8pA	350	69.07	c.37.1.20	60376
1j1yA	136	70.34	d.38.1.5	90776
1dqeA	137	71.03	a.39.2.1	17388
2b0jA	358	75.38	a.100.1.11,c.2.1.6	127639,127640
1xj4A	119	76.64	d.110.3.2	122027
1jx2B	315	80.68	c.37.1.8	67404
2uwjF	32	84.85		
1fkqA	124	86.26	d.2.1.2	36601
1ou8A	111	89.32	b.136.1.1	93543