# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k30A	368	5.829	c.112.1.1	68067
1auoA	218	11.14	c.69.1.14	34716
3b7kA	333	11.43		
1konA	249	13.34	e.39.1.1	72823
2oiwA	136	17.82		
1d4aA	273	17.92	c.23.5.3	31219
1xl3C	92	18.22	a.243.1.1	122104
2hejA	323	23.09		
2nudC	35	25.35		
1cqmA	101	29.82	d.58.14.1	39321
1mw7A	240	31.16	e.39.1.1	79557
1xj4A	119	33.56	d.110.3.2	122027
2oafA	151	35.21		
1ajsA	412	41.70	c.67.1.1	34276
2as0A	396	42.22	b.122.1.9,c.66.1.51	127227,127228
1kmkA	406	42.81	c.67.1.3	68696
1fkqA	124	43.22	d.2.1.2	36601
1ekfA	365	45.18	e.17.1.1	59445
2chgA	226	48.43		
1vmbA	140	48.49	d.58.14.1	113672
1s21A	206	48.98	d.166.1.4	105222
2d3dA	88	50.15		
1gh8A	89	53.64	d.58.12.1	39309
1rdsA	105	54.10	d.1.1.4	36236
2bzsA	236	56.12	c.23.5.3	129560
1qrdA	273	62.81	c.23.5.3	31217
2oqoA	200	64.43		
1tedA	393	65.15	c.95.1.2	106807
2uv0E	175	67.32		
2aliA	158	67.42	d.38.1.1	126976
3c66C	26	68.79		
1sg7A	96	69.21	a.239.1.1	118961
2b0jA	358	70.21	a.100.1.11,c.2.1.6	127639,127640
2blrA	206	70.77	b.25.1.1	128741
1ylkA	172	71.51		
1lswA	131	72.68	d.110.3.2	78181
2igtA	332	76.14	c.66.1.51	137401
1nvpD	108	77.19	a.32.1.1,b.56.1.1	92213,92214
1kjsA	74	78.86	a.50.1.1	17792
1n0wA	243	80.20	c.37.1.11	79772
1ixxB	123	81.60	d.169.1.1	42336
1gyzA	60	81.75	a.144.2.1	70793
1ug1A	92	84.58	b.34.2.1	99360
1ou8A	111	84.71	b.136.1.1	93543
1i0vA	104	86.87	d.1.1.4	36054
1j8bA	112	87.23	d.222.1.1	77101
1dqeA	137	87.82	a.39.2.1	17388
1npoC	95	88.09	b.9.1.1	23271
2p71A	132	88.64	a.39.2.1	139516