# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2as0A	396	6.181	b.122.1.9,c.66.1.51	127227,127228
1d4aA	273	8.651	c.23.5.3	31219
1ekfA	365	9.414	e.17.1.1	59445
1auoA	218	10.81	c.69.1.14	34716
1xl3C	92	13.42	a.243.1.1	122104
1wmiA	90	13.96	d.298.1.2	121045
2oiwA	136	15.59		
3b7kA	333	16.46		
1j1yA	136	16.54	d.38.1.5	90776
2b78A	385	16.84	b.122.1.9,c.66.1.51	128025,128026
2chgA	226	20.14		
2bn2A	95	20.24	b.9.1.1	23266
2oqoA	200	20.33		
2bzsA	236	21.16	c.23.5.3	129560
1yewA	382	31.71		
2hejA	323	31.88		
1qrdA	273	32.40	c.23.5.3	31217
1psuA	140	33.10	d.38.1.5	88285
1r45A	204	34.57	d.166.1.1	111683
1dfoA	417	37.09	c.67.1.4	34480
1npoC	95	39.11	b.9.1.1	23271
1ajsA	412	41.25	c.67.1.1	34276
2nudC	35	42.10		
1zj8A	566	42.92		
1sxjC	340	43.56	a.80.1.1,c.37.1.20	106085,106086
2oafA	151	44.17		
1phtA	85	45.28	b.34.2.1	24483
3cqyA	370	46.57		
3bjkA	153	48.22		
1l5cA	92	48.28	b.9.1.1	73577
1g8pA	350	49.29	c.37.1.20	60376
1nxmA	197	51.35	b.82.1.1	86385
2aalA	131	51.44	d.80.1.6	126483
1cqmA	101	52.05	d.58.14.1	39321
1s21A	206	52.72	d.166.1.4	105222
2v4bA	300	57.08		
1zuuA	58	58.90	b.34.2.1	125688
1wluA	136	60.13	d.38.1.5	121015
2d3dA	88	60.41		
2aliA	158	60.69	d.38.1.1	126976
2eisA	133	63.77		
2j6fA	62	65.94		
1tuc	63	67.16		
2vupA	190	69.30		
2q09A	416	69.77		
2hnuA	81	74.61		
2igtA	332	75.01	c.66.1.51	137401
2b0jA	358	77.27	a.100.1.11,c.2.1.6	127639,127640
1w44A	331	77.91	c.37.1.11	114147
2uv0E	175	78.66		
2uwjF	32	80.33		
1npoA	95	81.18	b.9.1.1	23270
1w70A	60	81.24		
3ck1A	150	82.82		
2d1xA	66	86.30		
2vhjA	331	86.35		
2ppqA	322	87.33		
4crxA	322	89.05	a.60.9.1,d.163.1.1	18095,42155