# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k30A	368	9.797	c.112.1.1	68067
1ekfA	365	11.47	e.17.1.1	59445
3b7kA	333	14.04		
2as0A	396	20.55	b.122.1.9,c.66.1.51	127227,127228
1xl3C	92	26.30	a.243.1.1	122104
1d4aA	273	27.17	c.23.5.3	31219
2oafA	151	31.51		
1nvpD	108	32.08	a.32.1.1,b.56.1.1	92213,92214
2oiwA	136	41.52		
2chgA	226	50.78		
1cqmA	101	54.11	d.58.14.1	39321
1gyzA	60	54.21	a.144.2.1	70793
1mw7A	240	56.72	e.39.1.1	79557
2nudC	35	61.41		
1ou8A	111	65.21	b.136.1.1	93543
1gh8A	89	68.10	d.58.12.1	39309
2d3dA	88	68.17		
1konA	249	68.46	e.39.1.1	72823
2igtA	332	71.34	c.66.1.51	137401
1ajsA	412	72.04	c.67.1.1	34276
1yewA	382	76.65		
1nh2D	121	78.80	a.32.1.1,b.56.1.1	91876,91877
1vmbA	140	80.35	d.58.14.1	113672
1auoA	218	83.16	c.69.1.14	34716
1zuuA	58	83.32	b.34.2.1	125688
1fkqA	124	83.54	d.2.1.2	36601