# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xl3C	92	1.112	a.243.1.1	122104
2dlaA	222	7.595		
1ajsA	412	9.438	c.67.1.1	34276
2ouwA	138	10.00		
1vpmA	169	11.08	d.38.1.1	113967
2esnA	310	13.07	a.4.5.37,c.94.1.1	132333,132334
2za4B	90	16.96		
2uv0E	175	18.72		
2v8hA	474	19.39		
1fkqA	124	21.25	d.2.1.2	36601
1f6rA	123	25.81	d.2.1.2	36606
2qalM	117	27.72		
1konA	249	30.65	e.39.1.1	72823
2ib0A	170	32.23		
1wmiA	90	34.44	d.298.1.2	121045
1akhB	83	34.87	a.4.1.1	15985
3bhcA	249	38.52		
1yizA	429	39.70	c.67.1.1	123375
1b9oA	123	40.84	d.2.1.2	36597
2o36A	674	43.73		
1jx2B	315	45.62	c.37.1.8	67404
2q97T	129	46.52		
1ki1B	352	48.65	a.87.1.1,b.55.1.1	72497,72498
2vdvE	246	52.23		
3ck6A	252	52.58		
1zr5A	214	53.45	c.50.1.2	125525
1nvpD	108	55.45	a.32.1.1,b.56.1.1	92213,92214
2pjwV	91	57.87		
2bhoA	130	59.94		
1s4bP	674	62.31	d.92.1.5	105252
1i6xA	209	63.37	a.4.5.4,b.82.3.2	83673,83674
1rtuA	114	67.20	d.1.1.4	36139
2hdwA	367	73.65		
1aiaA	396	76.27	c.67.1.1	34306
2oafA	151	78.45		
2e85A	159	78.87		
2a1dD	329	78.94		
1ay7B	89	79.00	c.9.1.1	30836
2nnwA	376	79.56		
2hraA	209	79.83		
2fi9A	128	80.26	c.103.1.1	133513
1b27D	90	80.39	c.9.1.1	30840
1b3sD	90	81.46	c.9.1.1	30846
1rdsA	105	81.77	d.1.1.4	36236
1s4kA	120	81.79	a.35.1.6	105254
1qryA	80	82.96	a.4.1.1	16016
1sg7A	96	83.41	a.239.1.1	118961
3ck1A	150	86.01		
2aalA	131	86.53	d.80.1.6	126483