# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qs0A	407	3.066	c.36.1.11	31829
2cmtA	172	3.213		
2biwA	490	4.829		
2guyA	478	5.591	b.71.1.1,c.1.8.1	135754,135755
2yweA	600	5.594		
1f1uA	323	7.137	d.32.1.3,d.32.1.3	83200,83201
2hejA	323	7.800		
1u0fA	564	11.06	c.80.1.2	112912
2as0A	396	11.19	b.122.1.9,c.66.1.51	127227,127228
1yp2A	451	11.80	b.81.1.4,c.68.1.6	123798,123799
2qc1B	212	12.42		
2bg9E	370	15.76		
1kmkA	406	15.92	c.67.1.3	68696
1rpnA	335	16.29	c.2.1.2	97708
1wpiA	133	18.26	c.47.1.18	121146
1xvlA	321	19.14	c.92.2.2	122380
1oi0A	124	20.81	c.97.3.1	93045
2z6wA	165	23.34		
3c8wA	255	25.68		
1nuiA	255	26.89	e.13.1.2,g.41.3.2	86194,86195
2ppqA	322	27.02		
1mjgM	729	27.24	e.26.1.3	79204
1t0gA	109	28.01	d.120.1.2	99063
1rdsA	105	28.24	d.1.1.4	36236
1zkcA	197	28.33	b.62.1.1	125182
1d9eA	284	30.10	c.1.10.4	29195
2a8lA	420	30.51		
1ezm	301	31.32		
1z70X	311	31.77	d.169.1.7	124581
1qksA	567	32.92	a.3.1.2,b.70.2.1	15951,27710
1jeqB	565	33.48	b.131.1.2,c.62.1.4	90368,90369
3c5rA	137	33.85		
2jaeA	489	33.89		
1k8tA	510	36.41	e.41.1.1	68316
1ou8A	111	36.68	b.136.1.1	93543
1ew2A	513	37.18	c.76.1.1	59525
1aiaA	396	37.48	c.67.1.1	34306
1lxdA	100	38.68	d.15.1.5	37624
1ox8A	107	38.84	b.136.1.1	93671
1k30A	368	42.06	c.112.1.1	68067
1qwkA	317	42.94	c.1.7.1	96482
2uv0E	175	43.69		
1eovA	487	44.39	b.40.4.1,d.104.1.1	25239,40760
1ef1A	294	44.61	a.11.2.1,b.55.1.5,d.15.1.4	16368,27003,37611
3cpxA	321	45.61		
2yy3A	91	46.57		
1gpuA	680	46.80	c.36.1.10,c.36.1.6,c.48.1.1	65454,65455,65456
1r1dA	247	46.81	c.69.1.29	96813
1z2lA	423	47.46	c.56.5.4,d.58.19.1	124383,124384
1lniA	96	47.79	d.1.1.2	74046
1s1dA	331	50.23	b.67.3.1	98344
1y42X	392	51.62		
1xl3C	92	51.67	a.243.1.1	122104
1eluA	390	52.62	c.67.1.3	34434
1g8pA	350	52.62	c.37.1.20	60376
1i7fA	292	52.91	d.193.1.1	61888
1pq7A	224	53.44	b.47.1.2	95002
1r9dA	787	55.09	c.7.1.1	104865
2j73A	103	55.15		
1j1yA	136	55.39	d.38.1.5	90776
1bxkA	355	55.85	c.2.1.2	29803
1w79A	489	57.07	e.3.1.3	120680
1p3wA	404	57.54	c.67.1.3	87752
1yyhA	253	58.18		
2rfiA	285	60.57		
1ym0A	238	61.33		
2cstA	411	61.53	c.67.1.1	34273
1v5dA	386	61.85	a.102.1.2	113537
2nsfA	261	65.50		
2cy2A	174	66.15	d.108.1.1	131016
1dik	874	66.84		
1io2A	213	69.27	c.55.3.1	62612
2f8yA	223	69.49		
1mt6A	280	70.39	b.76.2.1,b.85.7.1	79446,79447
2p39A	155	71.56		
2etjA	250	75.66	c.55.3.1	132360
1c93A	265	76.03	c.1.8.5	28998
2fvkA	559	76.78	b.92.1.3,c.1.9.6	134204,134205
2f6kA	307	77.94	c.1.9.15	133047
2eihA	343	79.25		
2z1yA	397	79.41		
1vns	609	79.62		
1q1aA	289	80.03	c.31.1.5	95561
1iznA	286	81.81	e.43.1.1	83847
1yhtA	367	82.24	c.1.8.6	123213
1poiA	317	83.92	c.124.1.2	34153
2hpvA	208	84.11		
1n7hA	381	84.30	c.2.1.2	80250
2chgA	226	84.54		
2bn2A	95	85.22	b.9.1.1	23266
2a8jA	420	85.49		
1z0wA	207	85.78		
1mp4A	292	86.07	c.68.1.6	79376
3bbyA	215	87.35		
1h0cA	392	87.60	c.67.1.3	83424
2bklA	695	89.67		
2oqoA	200	89.99