# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3b7kA	333	13.00		
1ekfA	365	15.80	e.17.1.1	59445
2as0A	396	20.00	b.122.1.9,c.66.1.51	127227,127228
1auoA	218	20.77	c.69.1.14	34716
1k30A	368	22.78	c.112.1.1	68067
2vupA	190	26.57		
1xl3C	92	28.52	a.243.1.1	122104
2oafA	151	29.19		
2nudC	35	32.58		
2oiwA	136	35.67		
1fkqA	124	35.84	d.2.1.2	36601
2hejA	323	36.15		
1konA	249	42.34	e.39.1.1	72823
1npoC	95	42.38	b.9.1.1	23271
1mw7A	240	42.88	e.39.1.1	79557
1d4aA	273	44.82	c.23.5.3	31219
1gh8A	89	46.57	d.58.12.1	39309
1ir6A	424	50.08	c.107.1.2	71342
1rdsA	105	50.85	d.1.1.4	36236
2bn2A	95	54.69	b.9.1.1	23266
1phtA	85	56.56	b.34.2.1	24483
1nvpD	108	58.95	a.32.1.1,b.56.1.1	92213,92214
2b0jA	358	65.74	a.100.1.11,c.2.1.6	127639,127640
1i0vA	104	72.95	d.1.1.4	36054
1nh2D	121	76.56	a.32.1.1,b.56.1.1	91876,91877
2igtA	332	78.32	c.66.1.51	137401
1wmiA	90	79.19	d.298.1.2	121045
1cqmA	101	80.03	d.58.14.1	39321
1l9xA	315	80.50	c.23.16.1	73762
1zuuA	58	81.32	b.34.2.1	125688
1yewA	382	84.09		
1l5cA	92	84.23	b.9.1.1	73577
2mev4	70	87.58		
2qalM	117	88.39		
1vmbA	140	88.87	d.58.14.1	113672
1ou8A	111	89.20	b.136.1.1	93543
1ojqA	212	89.85	d.166.1.1	93146