# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k30A	368	19.27	c.112.1.1	68067
1auoA	218	24.35	c.69.1.14	34716
3b7kA	333	24.79		
2chgA	226	25.96		
1ekfA	365	26.79	e.17.1.1	59445
1d4aA	273	26.93	c.23.5.3	31219
1xl3C	92	32.00	a.243.1.1	122104
2b0jA	358	33.74	a.100.1.11,c.2.1.6	127639,127640
2oafA	151	34.41		
2nudC	35	39.06		
2as0A	396	40.58	b.122.1.9,c.66.1.51	127227,127228
1fkqA	124	41.25	d.2.1.2	36601
2hejA	323	44.40		
1yewA	382	45.78		
1phtA	85	52.16	b.34.2.1	24483
2uv0E	175	53.12		
1nvpD	108	55.57	a.32.1.1,b.56.1.1	92213,92214
1sxjC	340	56.57	a.80.1.1,c.37.1.20	106085,106086
1g8pA	350	58.04	c.37.1.20	60376
2o88A	58	58.39		
1zuuA	58	59.09	b.34.2.1	125688
2yquA	455	61.00		
1cqmA	101	61.97	d.58.14.1	39321
2oiwA	136	64.21		
1pgvA	197	65.24	c.10.1.1	88073
1ajsA	412	65.41	c.67.1.1	34276
1kmkA	406	72.34	c.67.1.3	68696
2oqoA	200	73.18		
2igtA	332	75.48	c.66.1.51	137401
1gh8A	89	76.66	d.58.12.1	39309
1io0A	185	78.05	c.10.1.1	76753
1sg7A	96	79.14	a.239.1.1	118961
1nh2D	121	80.38	a.32.1.1,b.56.1.1	91876,91877
2j6fA	62	82.78		
2b78A	385	83.01	b.122.1.9,c.66.1.51	128025,128026